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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:50.5 nTPM
FANTOM5:79.1 Scaled Tags Per Million
Pig:75.0 nTPM
Mouse:81.4 nTPM
Allen mouse:7.7 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 43.2
2396 Male, age 61, right hemisphere 45.8
2032 Female, age 42, unknown 45.3
2497 Male, age 66, unknown 38.6
Centromedial thalamic nucleus
nTPM: 37.5
2401 Male, age 76, right hemisphere 41.3
2279 Female, age 85, left hemisphere 33.7
Habenula
nTPM: 41.7
1957 Male, age 80, both hemispheres 46.1
2203 Male, age 61, left hemisphere 41.4
2276 Male, age 66, unknown 39.9
2252 Male, age 62, unknown 39.2
Lateral geniculate body
nTPM: 45.9
2035 Female, age 72, unknown 54.9
1953 Male, age 62, unknown 48.9
2857 Male, age 74, right hemisphere 46.1
2659 Male, age 66, unknown 45.7
2106 Female, age 67, right hemisphere 45.5
2399 Male, age 61, left hemisphere 45.3
2575 Female, age 94, right hemisphere 41.1
2841 Male, age 80, both hemispheres 39.4
Lateral thalamic nuclei
nTPM: 42.9
2573 Female, age 94, left hemisphere 53.7
2661 Female, age 72, unknown 43.6
2765 Female, age 67, both hemispheres 41.2
2577 Male, age 74, both hemispheres 40.9
1903 Male, age 76, left hemisphere 35.0
Medial dorsal thalamic nucleus
nTPM: 45.3
2572 Female, age 94, right hemisphere 69.5
1859 Male, age 76, both hemispheres 50.8
2492 Male, age 75, right hemisphere 49.1
1810 Male, age 48, unknown 47.3
1971 Male, age 61, right hemisphere 45.5
2498 Male, age 66, unknown 43.7
1930 Female, age 42, unknown 42.5
2026 Male, age 62, unknown 41.3
2283 Male, age 80, right hemisphere 40.6
2402 Female, age 67, both hemispheres 40.5
2039 Female, age 72, unknown 40.1
2660 Female, age 72, unknown 40.0
2576 Male, age 74, both hemispheres 37.3
Medial geniculate body
nTPM: 45.0
2650 Female, age 94, left hemisphere 59.5
2571 Male, age 75, right hemisphere 51.5
1811 Female, age 42, unknown 47.7
2207 Male, age 80, right hemisphere 43.2
2657 Male, age 74, right hemisphere 40.0
2217 Female, age 72, unknown 39.8
2049 Male, age 76, both hemispheres 33.3
Nucleus reuniens
nTPM: 34.9
2205 Male, age 80, left hemisphere 36.7
2212 Female, age 67, left hemisphere 36.3
2210 Female, age 85, left hemisphere 31.6
Nucleus rhomboideus
nTPM: 35.3
2206 Male, age 80, both hemispheres 39.5
2213 Female, age 67, left hemisphere 36.3
2280 Female, age 85, left hemisphere 30.0
Posterior thalamic nucleus
nTPM: 50.5
2649 Female, age 94, both hemispheres 81.6
2655 Male, age 74, right hemisphere 42.5
2495 Female, age 67, right hemisphere 40.2
2266 Male, age 76, right hemisphere 37.8
Pulvinar
nTPM: 43.6
1932 Male, age 80, right hemisphere 48.7
1972 Male, age 62, unknown 47.5
2499 Male, age 66, unknown 46.2
1899 Female, age 42, unknown 45.0
2724 Male, age 74, right hemisphere 44.4
2398 Male, age 61, left hemisphere 43.9
1929 Male, age 48, unknown 42.8
2582 Female, age 72, unknown 40.5
2214 Male, age 76, right hemisphere 38.9
2496 Female, age 67, right hemisphere 37.8
Subthalamic nucleus
nTPM: 40.4
2658 Male, age 74, both hemispheres 56.9
2124 Male, age 62, unknown 48.5
2275 Male, age 66, unknown 39.9
2282 Male, age 61, both hemispheres 38.7
2056 Female, age 72, unknown 37.4
2779 Female, age 42, unknown 36.3
2406 Female, age 72, unknown 33.8
2216 Male, age 48, unknown 31.3
Ventral posterolateral thalamic nucleus
nTPM: 42.4
2740 Male, age 76, right hemisphere 49.3
2397 Male, age 61, right hemisphere 48.3
2570 Male, age 75, right hemisphere 43.9
2197 Male, age 80, both hemispheres 43.4
2578 Male, age 74, both hemispheres 38.0
2581 Female, age 72, unknown 31.5
Ventral posteromedial thalamic nucleus
nTPM: 41.3
2202 Male, age 61, left hemisphere 49.7
2281 Male, age 75, right hemisphere 44.5
2653 Male, age 74, both hemispheres 40.4
2758 Male, age 80, both hemispheres 38.2
2127 Male, age 76, right hemisphere 33.9
Ventral thalamic nuclei
nTPM: 44.1
1845 Male, age 48, unknown 53.2
1860 Male, age 76, both hemispheres 47.3
2285 Male, age 62, unknown 47.0
2580 Male, age 66, unknown 46.7
2652 Male, age 74, left hemisphere 44.4
2291 Female, age 72, unknown 42.0
2858 Female, age 72, unknown 39.0
1912 Female, age 42, unknown 38.7
2204 Male, age 80, both hemispheres 38.3
Zona incerta
nTPM: 38.7
2822 Male, age 74, right hemisphere 48.6
2215 Male, age 66, unknown 41.7
2663 Female, age 72, unknown 37.9
2208 Male, age 80, right hemisphere 36.3
2403 Male, age 62, unknown 28.9

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

79.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 79.1
FF:10154-103A1 76 years, female 79.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.0
Pig sample Sample description nTPM
Thalamus
nTPM: 75.0
Samples: 4

Max nTPM: 96.0
Min nTPM: 60.7
Sample A Female 96.0
Sample B Female 65.8
Sample C Male 77.5
Sample D Male 60.7

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.4
Mouse sample Sample description nTPM
Thalamus
nTPM: 81.4
Samples: 4

Max nTPM: 85.5
Min nTPM: 78.8
Sample A Male 82.4
Sample B Male 78.8
Sample C Female 85.5
Sample D Female 79.0

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.7
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 7.7
69529250 Antisense, RP_050421_03_H01, Mouse strain C57BL/6J (56 days, male) 7.7

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