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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:184.1 nTPM
GTEx:184.1 nTPM
FANTOM5:89.4 Scaled Tags Per Million
Pig:58.5 nTPM
Mouse:211.6 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 184.1
Samples: 105

Max nTPM: 355.0
Min nTPM: 96.5
Std nTPM: 50.8
Median nTPM:
415_1 77 years, female 355.0
490_1 67 years, female 334.9
466_1 57 years, female 316.3
414_1 84 years, female 316.2
491_1 89 years, female 293.0
32_1 67 years, male 289.5
217_1 76 years, male 275.3
149_1 88 years, male 275.1
162_1 79 years, female 259.8
413_1 59 years, female 256.1
81_1 67 years, male 252.3
246_1 77 years, male 250.1
43_1 64 years, female 242.1
237_1 82 years, male 235.1
355_1 70 years, female 231.8
495_1 57 years, female 229.0
324_1 76 years, male 223.4
265_1 87 years, male 222.1
389_1 86 years, female 221.8
468_1 89 years, male 221.5
229_1 69 years, female 220.0
172_1 72 years, female 219.1
352_1 62 years, male 217.3
425_1 59 years, female 216.4
375_1 74 years, female 216.3
142_1 61 years, female 214.5
126_1 63 years, male 212.3
526_1 61 years, male 210.1
153_1 70 years, female 209.3
115_1 83 years, male 208.0
405_1 91 years, male 204.3
307_1 66 years, female 203.7
35_1 74 years, female 203.3
499_1 55 years, female 202.7
89_1 63 years, male 200.2
6_1 73 years, female 197.2
347_1 72 years, male 194.6
117_1 61 years, male 192.1
518_1 75 years, female 191.0
386_1 76 years, male 187.0
266_1 85 years, male 186.9
447_1 81 years, male 186.5
254_1 77 years, female 185.6
9_1 66 years, female 182.7
243_1 75 years, male 182.4
42_1 85 years, male 178.5
316_1 62 years, male 178.3
404_1 82 years, female 177.5
189_1 76 years, male 177.2
251_1 78 years, male 176.9
291_1 76 years, male 176.7
137_1 83 years, male 176.5
517_1 88 years, male 175.2
288_1 66 years, female 170.9
379_1 60 years, male 170.4
311_1 78 years, male 170.0
503_1 68 years, male 168.2
313_1 79 years, female 167.9
322_1 76 years, male 167.9
119_1 70 years, female 167.7
139_1 64 years, female 166.8
348_1 84 years, male 166.4
315_1 62 years, female 164.3
384_1 83 years, male 163.4
145_1 84 years, male 162.6
321_1 62 years, female 162.3
292_1 71 years, male 161.4
394_1 75 years, female 161.1
377_1 82 years, female 158.8
396_1 62 years, male 157.4
286_1 68 years, female 157.1
335_1 73 years, female 157.0
173_1 67 years, male 155.8
18_1 88 years, male 155.2
354_1 81 years, female 155.1
17_1 71 years, male 154.9
99_1 64 years, male 153.9
350_1 84 years, female 152.2
293_1 68 years, female 148.2
318_1 68 years, male 147.9
406_1 79 years, male 147.9
177_1 74 years, male 147.0
319_1 81 years, male 145.4
120_1 70 years, female 144.6
480_1 63 years, male 142.5
353_1 82 years, female 142.4
501_1 88 years, male 140.8
163_1 78 years, male 139.6
264_1 73 years, female 137.9
2_1 77 years, female 137.3
314_1 67 years, male 136.1
317_1 60 years, male 133.0
349_1 83 years, male 132.2
109_1 81 years, female 129.4
320_1 89 years, female 129.3
218_1 71 years, female 125.5
356_1 87 years, female 124.1
4_1 88 years, female 123.8
376_1 75 years, female 122.6
308_1 70 years, female 114.4
351_1 91 years, male 112.2
41_1 94 years, female 110.1
452_1 88 years, female 107.2
506_1 65 years, male 98.6
295_1 61 years, female 96.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

89.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 89.4
FF:10030-101E3 24-65 years, mixed 89.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.5
Pig sample Sample description nTPM
Retina
nTPM: 58.5
Samples: 4

Max nTPM: 63.5
Min nTPM: 55.0
Sample A Female 55.0
Sample B Female 60.1
Sample C Male 63.5
Sample D Male 55.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

211.6
Mouse sample Sample description nTPM
Retina
nTPM: 211.6
Samples: 4

Max nTPM: 221.5
Min nTPM: 201.9
Sample A Male 221.5
Sample B Male 201.9
Sample C Female 213.3
Sample D Female 209.7

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