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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:892.1 nTPM
HPA Brain:371.5 nTPM
GTEx:892.1 nTPM
FANTOM5:177.9 Scaled Tags Per Million
Pig:1176.3 nTPM
Mouse:361.3 nTPM
Allen mouse:24.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

371.5
Sample id Sample description nTPM
Amygdala
nTPM: 371.5
2695 Female, age 67, right hemisphere 453.8
2514 Male, age 75, right hemisphere 373.3
2814 Male, age 76, right hemisphere 345.9
1987 Female, age 91, left hemisphere 342.5
2517 Female, age 94, left hemisphere 342.2
Basal amygdala
nTPM: 327.0
2827 Female, age 67, right hemisphere 419.8
2609 Male, age 75, right hemisphere 357.5
2685 Female, age 94, left hemisphere 333.5
2110 Male, age 80, left hemisphere 299.8
2243 Female, age 91, right hemisphere 297.3
1955 Male, age 76, both hemispheres 254.2
Central amygdala
nTPM: 354.5
2826 Female, age 94, left hemisphere 569.0
2515 Male, age 75, right hemisphere 374.2
2239 Male, age 80, left hemisphere 290.6
1905 Male, age 76, both hemispheres 279.9
2701 Female, age 91, right hemisphere 258.8
Corticomedial amygdala
nTPM: 300.0
2428 Male, age 75, right hemisphere 362.9
2535 Female, age 67, right hemisphere 314.8
2829 Male, age 80, left hemisphere 307.3
2242 Female, age 91, right hemisphere 286.8
2429 Female, age 94, left hemisphere 282.2
2240 Male, age 76, both hemispheres 245.9
Lateral amygdala
nTPM: 368.3
2830 Female, age 67, right hemisphere 524.4
2516 Male, age 75, right hemisphere 434.2
2534 Female, age 94, left hemisphere 430.6
2256 Male, age 80, left hemisphere 313.9
2255 Female, age 91, right hemisphere 256.7
1883 Male, age 76, both hemispheres 250.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

892.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 892.1
Samples: 152

Max nTPM: 2124.2
Min nTPM: 492.7
Std nTPM: 313.6
Median nTPM: 825.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2124.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2100.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1963.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1960.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1805.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1695.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1637.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1601.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1445.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1430.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1427.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1397.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1361.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1331.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1321.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1318.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1306.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1276.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1230.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1204.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1199.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1145.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1136.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1105.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1102.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1098.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1054.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1054.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1037.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1035.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1034.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1033.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1031.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1024.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 985.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 978.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 972.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 971.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 961.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 959.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 958.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 957.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 954.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 951.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 951.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 945.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 934.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 934.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 932.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 931.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 926.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 920.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 919.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 913.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 909.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 902.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 901.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 900.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 894.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 891.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 890.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 885.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 879.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 877.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 875.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 866.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 856.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 856.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 851.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 849.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 843.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 842.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 839.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 838.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 827.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 825.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 825.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 824.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 823.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 822.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 818.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 804.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 798.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 794.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 786.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 784.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 784.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 781.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 778.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 777.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 765.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 753.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 751.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 747.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 746.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 742.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 741.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 741.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 736.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 736.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 734.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 729.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 729.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 723.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 715.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 715.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 708.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 707.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 705.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 700.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 698.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 694.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 689.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 689.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 681.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 675.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 673.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 673.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 666.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 662.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 651.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 651.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 648.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 646.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 645.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 643.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 639.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 625.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 614.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 610.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 610.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 609.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 602.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 598.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 598.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 597.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 594.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 591.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 583.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 582.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 575.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 568.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 568.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 562.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 558.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 542.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 541.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 540.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 535.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 534.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 501.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 492.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

177.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 177.9
FF:10151-102I7 76 years, female 177.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1176.3
Pig sample Sample description nTPM
Amygdala
nTPM: 1176.3
Samples: 4

Max nTPM: 1609.5
Min nTPM: 740.0
Sample A Female 1609.5
Sample B Female 1237.7
Sample C Male 1118.1
Sample D Male 740.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

361.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 361.3
Samples: 4

Max nTPM: 395.3
Min nTPM: 334.0
Sample A Male 334.0
Sample B Male 363.6
Sample C Female 395.3
Sample D Female 352.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

24.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 24.9
69013702 Antisense, RP_050309_02_G10, Mouse strain C57BL/6J (56 days, male) 24.9

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