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UBA52
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  • UBA52
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:625.0 nTPM
FANTOM5:208.7 Scaled Tags Per Million
Pig:1213.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041344Antibody HPA049132
Glial cells Not detectedHigh
Neuronal cells LowMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

625.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 625.0
Samples: 246

Max nTPM: 1405.4
Min nTPM: 266.2
Std nTPM: 162.1
Median nTPM: 599.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1405.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1276.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1207.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1175.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1160.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1028.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1022.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1015.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 975.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 974.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 972.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 956.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 938.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 893.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 876.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 864.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 863.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 861.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 855.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 847.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 836.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 830.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 816.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 807.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 799.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 797.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 793.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 790.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 785.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 784.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 780.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 776.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 767.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 766.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 759.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 749.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 747.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 745.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 745.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 742.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 738.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 738.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 737.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 735.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 734.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 731.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 730.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 725.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 725.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 724.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 720.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 720.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 720.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 715.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 711.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 710.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 706.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 705.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 705.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 705.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 704.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 704.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 701.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 699.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 698.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 697.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 696.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 696.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 696.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 688.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 686.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 686.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 685.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 680.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 679.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 678.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 678.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 673.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 673.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 673.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 670.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 668.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 666.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 665.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 663.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 662.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 659.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 659.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 653.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 651.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 650.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 649.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 646.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 646.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 644.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 643.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 639.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 636.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 634.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 633.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 633.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 631.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 630.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 629.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 629.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 627.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 627.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 626.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 625.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 622.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 622.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 621.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 618.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 618.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 616.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 616.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 615.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 615.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 612.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 606.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 606.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 606.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 599.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 598.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 595.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 595.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 593.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 593.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 593.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 592.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 592.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 590.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 590.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 588.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 585.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 584.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 583.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 583.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 582.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 581.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 576.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 576.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 573.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 572.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 571.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 569.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 568.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 567.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 566.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 565.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 565.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 565.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 562.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 560.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 560.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 559.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 558.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 556.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 554.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 552.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 552.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 551.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 549.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 548.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 548.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 548.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 547.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 546.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 545.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 544.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 538.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 538.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 537.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 535.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 532.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 532.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 528.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 527.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 527.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 526.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 526.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 523.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 519.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 514.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 513.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 513.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 512.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 511.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 509.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 508.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 506.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 506.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 504.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 504.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 504.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 501.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 501.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 499.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 498.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 497.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 495.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 494.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 493.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 492.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 490.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 487.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 483.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 479.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 478.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 475.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 471.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 467.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 466.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 465.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 464.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 462.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 462.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 462.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 461.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 458.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 458.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 456.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 455.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 452.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 451.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 451.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 450.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 447.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 446.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 446.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 431.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 426.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 421.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 418.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 416.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 413.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 410.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 389.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 388.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 374.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 373.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 368.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 350.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 328.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 305.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 266.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

208.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 208.7
FF:10164-103B2 76 years, female 208.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1213.0
Pig sample Sample description nTPM
Caudate
nTPM: 1213.0
Samples: 4

Max nTPM: 1463.9
Min nTPM: 1000.3
Sample A Female 1151.3
Sample B Female 1236.5
Sample C Male 1463.9
Sample D Male 1000.3

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