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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:135.2 nTPM
HPA Brain:167.0 nTPM
GTEx:135.2 nTPM
FANTOM5:271.4 Scaled Tags Per Million
Pig:84.1 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.0
Sample id Sample description nTPM
Amygdala
nTPM: 167.0
2695 Female, age 67, right hemisphere 251.4
1987 Female, age 91, left hemisphere 154.3
2517 Female, age 94, left hemisphere 151.6
2814 Male, age 76, right hemisphere 148.5
2514 Male, age 75, right hemisphere 129.2
Basal amygdala
nTPM: 158.0
2609 Male, age 75, right hemisphere 226.1
2827 Female, age 67, right hemisphere 153.0
2243 Female, age 91, right hemisphere 151.1
2685 Female, age 94, left hemisphere 146.7
2110 Male, age 80, left hemisphere 136.6
1955 Male, age 76, both hemispheres 134.2
Central amygdala
nTPM: 162.0
2515 Male, age 75, right hemisphere 197.3
2826 Female, age 94, left hemisphere 175.8
1905 Male, age 76, both hemispheres 148.1
2701 Female, age 91, right hemisphere 145.3
2239 Male, age 80, left hemisphere 143.6
Corticomedial amygdala
nTPM: 138.2
2428 Male, age 75, right hemisphere 168.0
2535 Female, age 67, right hemisphere 148.2
2829 Male, age 80, left hemisphere 140.1
2242 Female, age 91, right hemisphere 137.3
2429 Female, age 94, left hemisphere 121.4
2240 Male, age 76, both hemispheres 114.0
Lateral amygdala
nTPM: 154.3
2516 Male, age 75, right hemisphere 191.3
2256 Male, age 80, left hemisphere 164.0
2830 Female, age 67, right hemisphere 153.2
2534 Female, age 94, left hemisphere 140.7
2255 Female, age 91, right hemisphere 139.5
1883 Male, age 76, both hemispheres 137.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 135.2
Samples: 152

Max nTPM: 253.8
Min nTPM: 4.7
Std nTPM: 38.0
Median nTPM: 133.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 253.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 223.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 220.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 217.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 216.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 208.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 206.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 198.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 197.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 196.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 194.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 194.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 190.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 186.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 183.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 182.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 182.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 179.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 177.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 177.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 174.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 173.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 173.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 172.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 169.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 168.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 167.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 167.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 167.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 167.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 167.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 166.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 166.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 163.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 162.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 162.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 161.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 161.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 161.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 161.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 159.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 158.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 158.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 157.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 155.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 153.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 153.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 152.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 152.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 152.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 151.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 150.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 150.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 149.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 147.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 146.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 146.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 145.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 145.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 144.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 143.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 141.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 140.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 140.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 139.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 139.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 139.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 138.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 138.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 138.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 137.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 136.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 135.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 134.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 133.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 133.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 133.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 133.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 133.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 132.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 132.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 131.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 131.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 129.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 129.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 129.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 129.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 128.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 128.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 128.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 127.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 125.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 125.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 124.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 122.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 121.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 120.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 119.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 118.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 117.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 116.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 115.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 115.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 115.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 115.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 115.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 114.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 113.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 113.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 113.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 113.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 109.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 109.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 108.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 107.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 106.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 105.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 105.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 103.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 103.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 101.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 101.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 101.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 100.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 99.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 97.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 95.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 95.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 94.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 93.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 93.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 92.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 92.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 92.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 92.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 86.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 86.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 86.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 86.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 84.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 84.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 83.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 81.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 80.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 80.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 75.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 75.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 73.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 71.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 69.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 68.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

271.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 271.4
FF:10151-102I7 76 years, female 271.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.1
Pig sample Sample description nTPM
Amygdala
nTPM: 84.1
Samples: 4

Max nTPM: 87.6
Min nTPM: 80.6
Sample A Female 87.6
Sample B Female 82.1
Sample C Male 80.6
Sample D Male 86.2

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