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  • HLA-DPB1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:171.6 nTPM
HPA:9.7 nTPM
GTEx:171.6 nTPM
FANTOM5:267.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA011078
Glandular cells Low



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9.7
overview
Male, age 65
Small intestine sample 232
nTPM: 17.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 0.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 3.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 17.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 171.6
Samples: 187

Max nTPM: 551.3
Min nTPM: 26.8
Std nTPM: 121.7
Median nTPM: 136.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 551.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 523.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 519.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 505.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 486.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 483.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 474.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 446.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 417.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 413.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 412.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 411.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 391.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 382.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 377.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 373.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 371.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 371.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 369.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 365.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 351.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 342.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 326.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 326.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 316.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 312.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 310.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 310.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 310.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 310.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 309.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 298.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 292.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 286.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 286.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 282.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 278.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 278.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 277.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 273.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 266.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 261.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 254.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 251.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 249.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 248.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 248.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 242.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 242.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 217.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 214.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 212.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 211.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 208.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 205.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 203.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 200.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 200.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 198.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 198.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 198.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 192.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 192.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 190.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 188.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 186.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 184.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 181.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 181.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 172.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 167.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 167.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 166.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 164.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 164.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 163.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 160.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 158.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 157.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 156.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 155.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 155.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 152.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 151.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 148.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 146.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 146.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 141.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 141.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 141.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 140.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 140.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 137.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 136.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 135.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 133.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 133.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 131.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 128.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 127.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 122.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 121.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 121.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 120.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 118.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 118.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 118.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 116.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 114.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 114.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 111.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 110.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 110.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 108.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 107.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 104.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 104.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 104.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 101.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 101.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 100.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 100.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 99.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 98.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 98.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 94.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 91.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 91.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 91.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 91.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 90.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 90.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 87.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 86.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 84.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 81.8
GTEX-1192X-2526-SM-59868 50-59 years, male 81.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 81.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 81.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 79.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 78.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 76.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 74.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 73.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 72.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 71.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 70.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 69.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 69.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 65.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 64.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 63.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 61.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 61.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 60.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 60.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 58.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 55.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 55.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 53.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 52.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 51.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 51.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 51.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 51.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 50.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 49.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 46.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 45.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 44.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 44.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 43.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 42.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 42.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 41.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 41.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 41.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 40.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 40.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 39.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 38.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 34.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 32.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 32.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 30.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 30.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 26.8
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

267.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 267.8
FF:10024-101D6 15,40,85 years, mixed 267.8

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