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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:176.1 nTPM
HPA Brain:75.0 nTPM
GTEx:176.1 nTPM
FANTOM5:69.6 Scaled Tags Per Million
Pig:74.3 nTPM
Mouse:119.6 nTPM
Allen mouse:2.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.0
Sample id Sample description nTPM
Amygdala
nTPM: 65.7
2695 Female, age 67, right hemisphere 81.5
2814 Male, age 76, right hemisphere 76.0
2517 Female, age 94, left hemisphere 58.4
1987 Female, age 91, left hemisphere 56.7
2514 Male, age 75, right hemisphere 55.9
Basal amygdala
nTPM: 69.2
2609 Male, age 75, right hemisphere 76.7
2685 Female, age 94, left hemisphere 72.5
2827 Female, age 67, right hemisphere 71.1
2243 Female, age 91, right hemisphere 68.0
1955 Male, age 76, both hemispheres 64.9
2110 Male, age 80, left hemisphere 62.1
Central amygdala
nTPM: 75.0
2826 Female, age 94, left hemisphere 99.8
2515 Male, age 75, right hemisphere 79.8
2239 Male, age 80, left hemisphere 71.1
1905 Male, age 76, both hemispheres 65.8
2701 Female, age 91, right hemisphere 58.3
Corticomedial amygdala
nTPM: 60.8
2829 Male, age 80, left hemisphere 74.1
2428 Male, age 75, right hemisphere 64.5
2535 Female, age 67, right hemisphere 62.4
2242 Female, age 91, right hemisphere 60.9
2429 Female, age 94, left hemisphere 52.7
2240 Male, age 76, both hemispheres 50.2
Lateral amygdala
nTPM: 74.1
2534 Female, age 94, left hemisphere 83.4
2830 Female, age 67, right hemisphere 80.0
1883 Male, age 76, both hemispheres 74.3
2256 Male, age 80, left hemisphere 74.1
2516 Male, age 75, right hemisphere 67.6
2255 Female, age 91, right hemisphere 65.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

176.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 176.1
Samples: 152

Max nTPM: 457.6
Min nTPM: 81.6
Std nTPM: 53.1
Median nTPM: 172.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 457.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 375.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 311.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 288.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 277.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 273.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 273.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 271.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 265.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 264.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 261.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 260.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 254.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 251.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 245.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 244.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 237.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 236.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 234.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 232.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 232.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 218.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 218.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 216.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 214.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 214.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 212.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 208.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 207.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 207.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 206.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 206.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 204.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 203.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 201.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 200.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 198.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 198.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 198.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 197.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 197.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 196.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 196.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 194.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 193.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 193.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 191.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 191.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 189.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 189.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 189.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 188.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 188.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 186.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 186.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 185.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 185.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 184.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 184.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 182.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 181.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 181.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 180.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 180.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 179.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 179.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 177.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 175.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 175.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 174.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 174.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 173.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 173.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 172.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 172.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 172.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 171.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 171.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 171.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 170.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 170.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 170.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 169.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 169.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 166.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 166.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 164.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 163.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 162.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 162.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 161.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 160.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 160.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 160.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 157.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 156.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 156.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 156.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 155.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 155.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 155.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 153.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 151.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 148.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 146.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 146.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 145.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 144.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 142.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 140.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 139.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 139.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 138.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 138.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 137.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 136.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 133.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 132.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 132.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 131.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 131.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 130.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 129.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 128.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 127.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 126.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 125.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 124.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 124.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 123.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 123.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 122.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 119.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 119.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 118.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 118.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 118.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 117.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 115.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 115.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 114.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 111.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 110.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 109.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 109.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 107.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 101.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 100.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 100.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 99.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 98.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 81.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

69.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 69.6
FF:10151-102I7 76 years, female 69.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.3
Pig sample Sample description nTPM
Amygdala
nTPM: 74.4
Samples: 4

Max nTPM: 86.7
Min nTPM: 57.8
Sample A Female 85.7
Sample B Female 67.2
Sample C Male 86.7
Sample D Male 57.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 119.6
Samples: 4

Max nTPM: 127.3
Min nTPM: 113.1
Sample A Male 118.8
Sample B Male 119.0
Sample C Female 127.3
Sample D Female 113.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.1
69528100 Antisense, RP_050421_03_B03, Mouse strain C57BL/6J (56 days, male) 2.1

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