MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.5 nTPM
HPA Brain:28.9 nTPM
GTEx:35.5 nTPM
FANTOM5:33.4 Scaled Tags Per Million
Pig:18.1 nTPM
Mouse:4.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.5
2586 Male, age 75, left hemisphere 42.2
2828 Female, age 72, unknown 28.4
2411 Female, age 72, unknown 26.7
2019 Male, age 18, unknown 26.5
2666 Male, age 74, left hemisphere 26.1
1827 Male, age 72, unknown 24.1
1870 Female, age 42, unknown 23.7
1830 Male, age 51, unknown 22.6
2219 Male, age 76, both hemispheres 22.4
1833 Male, age 53, unknown 22.3
Dorsal raphe nucleus
nTPM: 24.6
2047 Male, age 72, unknown 26.6
2750 Male, age 76, both hemispheres 24.9
1828 Male, age 53, unknown 24.6
2298 Female, age 72, unknown 24.6
2016 Female, age 72, unknown 22.2
Inferior colliculus
nTPM: 19.3
2849 Male, age 72, unknown 21.0
1848 Female, age 42, unknown 18.8
1890 Male, age 53, unknown 18.7
2097 Female, age 72, unknown 18.7
Median raphe nucleus
nTPM: 26.9
2220 Male, age 76, midline 26.9
Periaquaductal grey, anterior
nTPM: 26.4
1795 Male, age 51, unknown 29.6
1947 Male, age 18, unknown 25.6
2502 Female, age 75, unknown 24.1
Periaquaductal grey, dorsal
nTPM: 18.9
1831 Male, age 72, unknown 19.7
2850 Male, age 76, both hemispheres 19.3
1840 Male, age 53, unknown 18.7
2464 Female, age 72, unknown 18.0
Periaquaductal grey, lateral
nTPM: 21.6
2272 Male, age 74, both hemispheres 24.9
2053 Male, age 18, unknown 20.5
2140 Male, age 76, both hemispheres 19.5
Pretectal area
nTPM: 24.6
2007 Male, age 72, unknown 31.2
1817 Female, age 42, unknown 30.2
1816 Male, age 51, unknown 28.6
1944 Female, age 72, unknown 26.8
1815 Male, age 53, unknown 25.1
2407 Male, age 75, both hemispheres 24.4
2273 Male, age 74, both hemispheres 24.1
2224 Female, age 72, unknown 21.8
2825 Male, age 18, unknown 21.2
2667 Female, age 75, unknown 21.1
2316 Male, age 76, right hemisphere 15.8
Red nucleus
nTPM: 27.3
2584 Male, age 75, left hemisphere 34.9
2785 Male, age 18, unknown 31.0
2588 Male, age 74, left hemisphere 29.0
2725 Female, age 75, unknown 28.0
2503 Female, age 72, unknown 27.6
1904 Male, age 53, unknown 27.2
1865 Male, age 51, unknown 25.8
2769 Male, age 72, unknown 25.8
2227 Male, age 72, unknown 25.5
2823 Male, age 76, right hemisphere 25.0
1954 Female, age 42, unknown 24.4
1821 Female, age 72, unknown 23.8
Substantia nigra
nTPM: 28.9
1916 Female, age 42, unknown 37.8
2583 Male, age 75, right hemisphere 34.1
1941 Male, age 53, unknown 31.8
2665 Male, age 74, both hemispheres 31.5
1851 Male, age 51, unknown 30.7
2590 Female, age 75, unknown 30.1
2699 Male, age 18, unknown 28.2
1889 Female, age 72, unknown 27.4
2241 Male, age 72, unknown 19.9
2409 Female, age 72, unknown 17.1
Superior colliculus
nTPM: 24.3
2664 Male, age 75, both hemispheres 31.0
1796 Male, age 53, unknown 27.2
2668 Female, age 75, unknown 27.2
1995 Male, age 72, unknown 25.9
2261 Male, age 18, unknown 25.4
1913 Female, age 42, unknown 24.0
2587 Male, age 74, left hemisphere 22.3
2087 Female, age 72, unknown 21.8
1839 Male, age 51, unknown 20.9
1895 Male, age 76, right hemisphere 17.0
Ventral tegmental area
nTPM: 26.4
1915 Female, age 42, unknown 29.7
2410 Female, age 72, unknown 28.6
2223 Female, age 72, unknown 26.0
1942 Male, age 51, unknown 25.3
2218 Male, age 76, both hemispheres 24.8
2021 Male, age 53, unknown 24.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 35.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.5
Samples: 139

Max nTPM: 86.8
Min nTPM: 14.7
Std nTPM: 10.1
Median nTPM: 33.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 86.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 66.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 63.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 61.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 57.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 56.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 56.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 55.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 52.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 52.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 51.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.4
FF:10158-103A5 76 years, female 33.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 18.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.1
Samples: 4

Max nTPM: 22.2
Min nTPM: 14.4
Sample A Female 22.2
Sample B Female 17.4
Sample C Male 14.4
Sample D Male 18.4
Midbrain
nTPM: 16.5
Samples: 4

Max nTPM: 20.5
Min nTPM: 12.6
Sample A Female 20.5
Sample B Female 17.0
Sample C Male 12.6
Sample D Male 15.7
Periaqueductal gray
nTPM: 14.1
Samples: 3

Max nTPM: 14.4
Min nTPM: 13.7
Sample B Female 13.7
Sample C Male 14.4
Sample D Male 14.2
Superior colliculi
nTPM: 15.9
Samples: 4

Max nTPM: 19.5
Min nTPM: 14.2
Sample A Female 19.5
Sample B Female 14.6
Sample C Male 14.2
Sample D Male 15.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.3
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.2
Sample A Male 4.7
Sample B Male 3.2
Sample C Female 3.9
Sample D Female 5.4

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