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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:289.4 nTPM
HPA:289.4 nTPM
GTEx:211.8 nTPM
FANTOM5:714.5 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

289.4
overview
Male, age 65
Small intestine sample 232
nTPM: 283.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 316.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 265.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 292.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

211.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 211.8
Samples: 187

Max nTPM: 379.9
Min nTPM: 139.1
Std nTPM: 41.9
Median nTPM: 203.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 379.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 374.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 351.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 321.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 311.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 305.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 303.7
GTEX-1192X-2526-SM-59868 50-59 years, male 299.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 297.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 293.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 293.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 287.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 277.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 274.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 274.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 272.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 270.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 269.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 269.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 267.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 261.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 260.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 258.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 256.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 253.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 252.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 251.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 251.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 250.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 249.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 245.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 244.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 244.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 242.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 242.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 242.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 241.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 240.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 240.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 239.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 239.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 238.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 238.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 237.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 237.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 236.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 235.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 232.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 231.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 231.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 230.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 229.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 228.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 228.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 227.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 226.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 226.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 226.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 226.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 225.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 224.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 224.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 224.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 224.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 223.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 222.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 221.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 220.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 220.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 218.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 218.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 215.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 215.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 215.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 215.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 215.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 213.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 212.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 211.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 210.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 210.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 210.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 209.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 207.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 207.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 207.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 206.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 206.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 206.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 205.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 205.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 204.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 204.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 203.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 202.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 202.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 202.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 202.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 201.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 201.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 200.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 200.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 199.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 198.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 198.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 198.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 197.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 196.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 195.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 195.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 194.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 193.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 193.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 193.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 192.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 191.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 191.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 191.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 191.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 191.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 190.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 190.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 190.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 190.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 189.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 189.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 189.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 189.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 187.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 187.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 187.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 186.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 186.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 186.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 185.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 184.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 184.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 184.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 184.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 183.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 183.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 183.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 183.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 182.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 181.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 180.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 179.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 179.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 179.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 179.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 178.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 178.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 178.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 177.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 176.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 175.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 175.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 174.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 173.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 173.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 172.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 170.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 170.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 169.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 169.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 168.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 166.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 165.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 163.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 163.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 162.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 162.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 161.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 161.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 159.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 159.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 158.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 157.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 155.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 155.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 154.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 154.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 152.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 148.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 148.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 143.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 139.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

714.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 714.5
FF:10024-101D6 15,40,85 years, mixed 714.5

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