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RPL41
HPA
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:3423.1 nTPM
HPA:3056.0 nTPM
GTEx:3423.1 nTPM
FANTOM5:63.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA053169
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3056.0
overview
Male, age 65
Small intestine sample 232
nTPM: 3789.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 2937.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 2652
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 2844.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3423.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 3423.1
Samples: 187

Max nTPM: 5785.0
Min nTPM: 1992.7
Std nTPM: 719.3
Median nTPM: 3311.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 5785.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 5668.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 5629.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 5298.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 5293.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 5195.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 4987.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 4926.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 4896.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 4892.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 4880.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 4843.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 4816.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 4769.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 4663.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 4471.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 4419.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 4407.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 4381.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 4323.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 4307.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 4284.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 4250.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 4219.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 4206.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 4184.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 4132.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 4100.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 4088.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 4058.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 4055.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 4041.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 4033.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 4019.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 3954.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 3918.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 3912.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 3900.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 3899.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 3892.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 3886.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 3883.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 3832.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 3830.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 3814.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 3808.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 3799.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 3797.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 3763.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 3758.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 3755.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 3750.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 3743.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 3743.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 3739.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 3720.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 3708.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 3676.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 3672.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 3657.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 3627.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 3618.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 3617.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 3605.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 3595.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 3589.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 3582.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 3565.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 3536.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 3522.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 3506.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 3467.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 3463.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 3458.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 3429.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 3427.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 3426.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 3426.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 3411.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 3409.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 3392.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 3388.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 3383.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 3379.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 3369.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 3368.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 3364.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 3342.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 3338.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 3337.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 3331.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 3328.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 3325.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 3311.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 3309.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 3308.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 3303.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 3294.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 3257.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 3257.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 3254.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 3251.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 3247.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 3247.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 3239.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 3238.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 3231.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 3227.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 3209.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 3181.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 3176.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 3176.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 3174.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 3169.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 3155.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 3145.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 3140.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 3136.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 3124.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 3103.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 3098.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 3083.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 3075.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 3068.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 3062.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 3060.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 3042.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 3035.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 3028.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 3027.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 3016.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 3010.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 3009.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 3000.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 2993.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 2989.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 2988.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2974.4
GTEX-1192X-2526-SM-59868 50-59 years, male 2967.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2952.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 2943.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 2918.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 2907.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 2901.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2897.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 2885.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 2864.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 2831.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 2819.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 2809.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 2809.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 2790.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 2785.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 2779.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 2770.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 2758.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2755.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 2729.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2712.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 2700.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 2699.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 2690.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 2677.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2640.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 2637.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 2605.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 2599.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 2594.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 2556.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 2556.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 2554.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 2541.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 2524.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 2495.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 2481.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 2473.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 2468.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 2463.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 2442.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 2411.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 2385.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2380.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 2346.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 2307.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 2289.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 2278.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1992.7
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

63.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 63.5
FF:10024-101D6 15,40,85 years, mixed 63.5

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