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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2493.3 nTPM
HPA:2019.2 nTPM
GTEx:2493.3 nTPM
FANTOM5:210.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA050159
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2019.2
overview
Male, age 65
Small intestine sample 232
nTPM: 2687
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1867.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1780.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1742.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2493.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2493.3
Samples: 187

Max nTPM: 6433.7
Min nTPM: 1000.8
Std nTPM: 847.9
Median nTPM: 2347.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 6433.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 4903.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 4881.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 4690.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 4611.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 4581.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 4280.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 4196.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 4155.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 4128.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 4075.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 3938.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 3935.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 3925.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 3897.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 3832.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 3818.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 3746.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 3676.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 3631.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 3613.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 3532.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 3489.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 3462.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 3445.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 3401.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 3345.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 3328.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 3311.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 3282.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 3175.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 3104.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 3078.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 3074.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 3063.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 3045.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 3036.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 3023.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 3018.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 3016.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 3009.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 2986.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 2966.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 2966.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2961.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2959.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2939.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 2930.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2923.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2906.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 2906.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 2903.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2895.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 2873.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2872.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2868.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 2865.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 2843.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2836.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 2811.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2807.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2792.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 2778.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2759.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 2741.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 2729.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 2678.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2674.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 2664.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 2653.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2643.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2641.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2594.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 2592.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 2571.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 2526.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2487.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 2484.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 2472.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2471.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2462.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 2459.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 2455.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 2443.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 2426.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 2410.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2403.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2394.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2393.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 2382.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 2379.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2354.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2351.9
GTEX-1192X-2526-SM-59868 50-59 years, male 2347.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 2340.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 2324.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 2324.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 2308.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 2301.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 2294.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2281.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 2259.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 2251.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2247.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 2241.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 2238.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 2227.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 2191.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 2185.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2161.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 2145.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2132.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 2119.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2107.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 2086.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 2068.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 2045.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 2043.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 2036.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 2027.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 2017.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 2014.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 2006.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 2006.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1991.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1984.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1962.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1959.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1951.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1947.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1940.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1933.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1915.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1911.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1907.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1898.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1892.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1874.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1863.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1854.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1836.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1820.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1814.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1808.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1807.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1807.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1804.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1799.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1788.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1784.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1782.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1769.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1753.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1745.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1739.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1722.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1711.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1685.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1681.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1678.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1662.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1660.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1653.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1652.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1650.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1649.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1647.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1634.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1630.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1615.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1595.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1564.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1560.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 1543.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1533.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1499.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1494.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1450.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1437.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1399.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1385.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1376.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1352.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1251.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1194.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1128.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1000.8
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

210.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 210.9
FF:10024-101D6 15,40,85 years, mixed 210.9

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