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  • PHGR1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: High
Goblet cells: High
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2258.4 nTPM
HPA:1563.9 nTPM
GTEx:2258.4 nTPM
FANTOM5:3023.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA068787
Endocrine cells High
Enterocytes High
Enterocytes - Microvilli High
Goblet cells High
Paneth cells Not detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1563.9
overview
Male, age 65
Small intestine sample 232
nTPM: 1486.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 2521.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1119
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1128.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2258.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2258.4
Samples: 187

Max nTPM: 14022.1
Min nTPM: 0.0
Std nTPM: 2772.2
Median nTPM: 1282.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 14022.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 13392.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 11855.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 9951.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 9287.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 9006.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 8817.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 8745.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 8150.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 7985.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 7974.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 7788.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 7780.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 7006.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 6826.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 6704.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 6468.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 6284.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 6016.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 5974.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 5921.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 5767.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 5608.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 5580.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 5560.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 5460.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 5408.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 5378.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 5288.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 4811.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 4800.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 4494.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 4489.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 4467.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 4407.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 4342.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 4236.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 4232.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 4194.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 3991.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 3948.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 3859.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 3855.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 3853.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 3805.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 3757.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 3566.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 3363.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 3310.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 3284.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 3270.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 3229.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 3047.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 3011.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 3003.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 2931.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2868.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 2835.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 2682.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 2619.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 2589.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 2529.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 2381.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 2325.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2321.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2145.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 2131.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 2130.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2085.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2031.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1973.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1966.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 1942.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1905.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1871.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1833.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1821.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1666.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1613.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1590.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1575.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1570.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 1556.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1554.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1523.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1484.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1483.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1447.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1438.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1387.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1346.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1326.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1314.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1282.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1281.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1202.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1143.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1130.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 895.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 879.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 862.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 846.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 837.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 783.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 722.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 706.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 681.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 624.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 565.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 532.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 518.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 488.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 483.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 482.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 469.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 431.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 430.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 423.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 402.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 398.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 379.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 362.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 343.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 343.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 334.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 325.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 303.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 296.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 288.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 282.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 267.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 260.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 248.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 246.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 242.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 241.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 233.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 188.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 180.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 178.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 173.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 167.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 159.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 150.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 134.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 124.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 121.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 120.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 105.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 86.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 85.7
GTEX-1192X-2526-SM-59868 50-59 years, male 85.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 78.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 77.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 75.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 73.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 69.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 69.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 69.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 67.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 65.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 63.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 62.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 54.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 47.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 46.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 38.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 34.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 29.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 26.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 24.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 24.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 24.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 23.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 22.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 22.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 21.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 18.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 14.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 13.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 11.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 10.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 10.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 8.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 2.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3023.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 3023.8
FF:10024-101D6 15,40,85 years, mixed 3023.8

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