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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:143.9 nTPM
HPA Brain:65.1 nTPM
GTEx:143.9 nTPM
FANTOM5:2.8 Scaled Tags Per Million
Pig:960.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 53.4
2565 Male, age 75, midline 88.7
1981 Female, age 72, midline 62.4
2194 Female, age 79, both hemispheres 39.7
2816 Male, age 47, midline 39.7
2048 Male, age 55, midline 36.4
Cervical spinal cord, dorsal horn
nTPM: 50.5
2173 Female, age 72, unknown 65.8
2069 Male, age 47, both hemispheres 63.2
2296 Male, age 66, both hemispheres 52.6
1877 Male, age 55, unknown 52.0
2297 Male, age 75, both hemispheres 35.0
2721 Male, age 90, both hemispheres 34.4
Cervical spinal cord, ventral horn
nTPM: 65.1
2480 Male, age 75, both hemispheres 106.5
2809 Male, age 90, both hemispheres 90.1
2068 Male, age 55, unknown 59.7
2098 Female, age 72, unknown 58.8
2295 Male, age 66, both hemispheres 40.4
2820 Female, age 79, both hemispheres 35.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 143.9
Samples: 159

Max nTPM: 317.6
Min nTPM: 49.1
Std nTPM: 51.4
Median nTPM: 133.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 317.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 307.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 289.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 280.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 274.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 271.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 247.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 237.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 234.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 232.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 231.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 228.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 225.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 224.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 224.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 220.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 215.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 215.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 215.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 211.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 209.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 207.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 203.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 198.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 195.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 194.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 193.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 193.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 192.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 192.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 191.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 191.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 180.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 177.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 175.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 172.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 171.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 170.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 170.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 169.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 166.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 166.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 165.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 163.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 163.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 162.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 159.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 159.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 158.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 157.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 156.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 156.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 156.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 154.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 148.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 148.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 148.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 148.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 147.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 146.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 144.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 143.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 142.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 142.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 141.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 140.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 139.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 139.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 138.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 138.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 138.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 138.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 138.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 137.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 137.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 137.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 136.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 136.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 134.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 133.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 132.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 131.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 131.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 131.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 131.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 131.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 130.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 129.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 129.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 127.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 126.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 126.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 126.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 125.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 125.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 124.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 124.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 123.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 123.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 123.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 121.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 121.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 119.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 118.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 118.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 117.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 117.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 117.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 116.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 115.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 113.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 113.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 112.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 111.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 111.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 110.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 110.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 109.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 109.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 108.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 107.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 106.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 106.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 106.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 106.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 105.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 104.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 103.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 103.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 102.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 101.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 100.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 97.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 97.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 96.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 96.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 95.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 95.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 94.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 93.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 92.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 88.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 88.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 87.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 84.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 83.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 80.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 78.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 78.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 77.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 75.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 75.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 74.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 73.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 71.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 66.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 65.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 62.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 49.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 2.8
FF:10181-103D1 60 years, female 3.5
FF:10159-103A6 76 years, female 2.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

960.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 960.0
Samples: 4

Max nTPM: 1468.6
Min nTPM: 661.6
Sample A Female 661.6
Sample B Female 968.0
Sample C Male 1468.6
Sample D Male 741.9
Ventral spinal cord
nTPM: 844.5
Samples: 4

Max nTPM: 1005.2
Min nTPM: 663.6
Sample A Female 663.6
Sample B Female 883.3
Sample C Male 1005.2
Sample D Male 825.8

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