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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:232.5 nTPM
GTEx:232.5 nTPM
FANTOM5:11.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA047132
Squamous epithelial cells Medium


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

232.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 232.5
Samples: 156

Max nTPM: 587.6
Min nTPM: 105.1
Std nTPM: 73.4
Median nTPM: 218.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 587.6
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 487.0
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 452.7
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 412.0
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 409.7
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 393.8
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 391.0
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 380.3
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 366.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 346.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 346.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 333.3
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 330.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 328.7
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 325.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 324.7
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 322.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 317.2
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 313.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 308.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 300.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 298.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 296.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 295.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 295.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 292.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 289.4
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 288.2
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 287.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 287.5
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 285.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 280.9
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 279.8
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 276.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 273.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 272.1
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 271.5
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 265.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 263.3
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 260.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 260.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 259.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 258.8
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 255.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 254.3
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 254.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 253.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 253.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 252.7
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 252.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 252.1
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 252.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 250.8
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 250.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 248.0
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 247.9
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 246.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 246.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 241.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 240.3
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 237.0
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 236.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 232.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 232.8
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 231.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 229.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 226.8
GTEX-16NPV-2526-SM-6M483 50-59 years, female 226.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 226.3
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 224.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 224.0
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 222.2
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 222.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 221.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 220.1
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 219.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 219.4
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 219.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 217.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 217.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 217.5
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 216.9
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 216.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 216.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 215.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 214.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 213.8
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 213.6
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 212.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 210.3
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 210.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 210.0
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 208.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 205.4
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 205.4
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 202.0
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 201.6
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 201.2
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 200.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 200.0
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 199.9
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 199.2
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 199.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 198.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 197.9
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 197.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 196.4
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 195.4
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 194.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 194.3
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 193.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 193.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 192.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 192.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 192.1
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 190.6
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 190.2
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 188.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 187.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 185.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 181.7
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 180.7
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 180.1
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 179.9
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 177.7
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 177.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 177.3
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 177.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 174.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 172.6
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 171.5
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 170.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 170.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 168.7
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 167.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 165.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 160.9
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 160.5
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 159.7
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 157.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 152.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 150.9
GTEX-1C475-0526-SM-793AC 40-49 years, female 143.5
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 141.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 136.6
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 136.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 135.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 134.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 131.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 130.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 129.1
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 121.3
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 119.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 113.0
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 110.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 105.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

11.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 11.9
FF:10204-103F6 68 years, female 11.9

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