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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:64.6 nTPM
HPA Brain:48.5 nTPM
GTEx:64.6 nTPM
FANTOM5:59.3 Scaled Tags Per Million
Pig:0.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 32.0
2194 Female, age 79, both hemispheres 43.5
1981 Female, age 72, midline 33.6
2048 Male, age 55, midline 31.8
2565 Male, age 75, midline 27.1
2816 Male, age 47, midline 23.9
Cervical spinal cord, dorsal horn
nTPM: 41.7
2721 Male, age 90, both hemispheres 62.4
1877 Male, age 55, unknown 52.7
2069 Male, age 47, both hemispheres 50.3
2297 Male, age 75, both hemispheres 37.7
2173 Female, age 72, unknown 35.5
2296 Male, age 66, both hemispheres 11.7
Cervical spinal cord, ventral horn
nTPM: 48.5
2295 Male, age 66, both hemispheres 80.1
2809 Male, age 90, both hemispheres 55.4
2820 Female, age 79, both hemispheres 45.7
2068 Male, age 55, unknown 41.3
2098 Female, age 72, unknown 40.4
2480 Male, age 75, both hemispheres 28.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 64.6
Samples: 159

Max nTPM: 527.3
Min nTPM: 2.2
Std nTPM: 74.9
Median nTPM: 41.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 527.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 444.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 327.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 297.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 290.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 286.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 275.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 250.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 220.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 168.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 149.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 139.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 135.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 135.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 123.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 118.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 117.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 115.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 114.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 113.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 107.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 106.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 106.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 103.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 102.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 95.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 95.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 94.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 94.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 91.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 89.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 86.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 86.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 85.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 83.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 82.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 77.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 77.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 76.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 75.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 74.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 72.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 71.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 66.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 65.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 64.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 63.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 62.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 62.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 61.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 60.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 57.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 57.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 57.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 55.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 55.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 54.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 54.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 54.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 53.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 53.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 50.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 50.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 49.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 49.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 49.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 49.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 48.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 47.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 47.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 46.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 46.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 45.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 45.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 44.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 43.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 42.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 41.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 41.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 41.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 41.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 41.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 40.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 40.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 39.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 38.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 38.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 38.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 38.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 38.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 36.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 36.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 36.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 35.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 35.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 32.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 31.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 31.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 30.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 30.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 30.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 30.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 28.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 28.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 28.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 28.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 28.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 28.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 27.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 27.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 26.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 26.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 26.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 26.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 26.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 25.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 25.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 25.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 25.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 25.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 24.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 24.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 24.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 24.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 23.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 23.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 23.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 23.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 23.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 22.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 21.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 21.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 21.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 21.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 20.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 20.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 20.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 20.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 18.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 17.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 17.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 16.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 15.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 15.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 15.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 14.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 14.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 14.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 13.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 13.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 13.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 12.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 10.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 10.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 9.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 7.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 5.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 2.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 2.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

59.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 59.3
FF:10159-103A6 76 years, female 66.7
FF:10181-103D1 60 years, female 51.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.1
Sample C Male 0.0
Sample D Male 0.1
Ventral spinal cord
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.2
Sample B Female 0.0
Sample C Male 0.2
Sample D Male 0.0

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