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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1084.4 nTPM
FANTOM5:253.9 Scaled Tags Per Million
Pig:7.2 nTPM

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1084.4
Sample id Sample description nTPM
Area postrema
nTPM: 1084.4
2799 Male, age 61, both hemispheres 2038.8
2306 Male, age 80, both hemispheres 802.6
2054 Male, age 76, both hemispheres 411.8
Dorsal medullary reticular nucleus
nTPM: 362.4
2373 Male, age 61, both hemispheres 472.2
2040 Female, age 85, both hemispheres 313.3
2088 Male, age 76, both hemispheres 301.7
Dorsal motor vagal complex
nTPM: 589.6
2797 Male, age 61, both hemispheres 1083.0
2813 Female, age 72, unknown 806.0
2643 Male, age 74, both hemispheres 780.7
2185 Male, age 76, both hemispheres 563.3
2807 Female, age 85, both hemispheres 446.4
2844 Male, age 55, unknown 426.7
2000 Male, age 74, unknown 343.5
2133 Female, age 91, both hemispheres 267.4
Gigantocellular reticular nuclei, medullary
nTPM: 233.1
2314 Male, age 61, both hemispheres 429.3
1876 Female, age 85, both hemispheres 292.0
2387 Female, age 91, both hemispheres 227.3
2462 Male, age 74, both hemispheres 182.9
2022 Male, age 76, right hemisphere 144.4
2310 Male, age 80, both hemispheres 122.6
Gigantocellular reticular nuclei, pars
nTPM: 214.5
2084 Female, age 85, both hemispheres 315.7
2336 Male, age 61, both hemispheres 242.7
2706 Male, age 80, both hemispheres 175.5
2330 Male, age 80, both hemispheres 171.1
2168 Male, age 76, both hemispheres 167.3
Inferior olive
nTPM: 454.5
2085 Female, age 85, both hemispheres 541.1
2178 Male, age 61, both hemispheres 531.9
2379 Male, age 80, both hemispheres 481.4
2563 Male, age 74, both hemispheres 474.8
2628 Female, age 91, both hemispheres 243.4
Lateral medullary reticular nucleus
nTPM: 511.5
2852 Male, age 80, both hemispheres 670.5
2190 Female, age 85, both hemispheres 584.1
2305 Male, age 74, both hemispheres 543.3
2374 Male, age 61, both hemispheres 510.4
2804 Female, age 91, both hemispheres 491.6
2044 Male, age 76, both hemispheres 269.3
Medial olivary nucleus
nTPM: 401.0
1943 Male, age 61, both hemispheres 539.5
2138 Female, age 91, both hemispheres 382.3
1962 Male, age 76, both hemispheres 375.8
2851 Male, age 80, both hemispheres 306.5
Medial vestibular nucleus
nTPM: 159.0
2134 Male, age 76, both hemispheres 257.4
2743 Female, age 85, both hemispheres 180.0
2801 Male, age 74, both hemispheres 145.5
2093 Male, age 80, both hemispheres 143.2
2624 Male, age 61, both hemispheres 128.4
2803 Female, age 91, both hemispheres 99.6
Motor hypoglossal nucleus
nTPM: 285.8
2461 Male, age 61, both hemispheres 372.5
2277 Male, age 76, both hemispheres 353.6
2132 Female, age 85, both hemispheres 244.3
2182 Male, age 80, both hemispheres 241.5
2125 Female, age 91, both hemispheres 217.1
Nucleus ambiguus
nTPM: 536.1
2071 Male, age 76, both hemispheres 745.7
2096 Female, age 85, both hemispheres 326.4
Nucleus cuneatus
nTPM: 471.3
2808 Female, age 85, both hemispheres 804.6
2380 Male, age 80, both hemispheres 632.3
2564 Male, age 74, both hemispheres 573.9
2562 Male, age 61, both hemispheres 548.0
2100 Male, age 76, both hemispheres 382.7
2381 Male, age 80, both hemispheres 375.4
2376 Male, age 61, both hemispheres 371.9
2805 Female, age 91, both hemispheres 293.2
2131 Male, age 76, both hemispheres 259.8
Nucleus gracilis
nTPM: 629.5
2627 Male, age 74, both hemispheres 831.4
2299 Female, age 85, both hemispheres 616.0
2382 Male, age 80, both hemispheres 440.9
Nucleus raphe obscurus
nTPM: 412.4
2142 Male, age 76, midline 623.0
2800 Male, age 61, midline 326.5
2845 Female, age 85, midline 287.7
Nucleus raphe pallidus
nTPM: 285.3
2145 Male, age 76, midline 372.5
2183 Male, age 80, midline 242.4
1924 Male, age 61, midline 240.9
Nucleus tractus solitarii
nTPM: 327.8
2191 Female, age 85, both hemispheres 504.7
2656 Male, age 76, both hemispheres 305.2
2307 Male, age 80, both hemispheres 287.6
2144 Female, age 91, right hemisphere 213.6
Parvicellular reticular nuclei
nTPM: 245.6
2119 Male, age 80, both hemispheres 291.8
2095 Male, age 76, both hemispheres 226.3
2558 Male, age 74, both hemispheres 218.7
Parvicellular reticular nuclei, medullary
nTPM: 202.7
2181 Male, age 80, left hemisphere 240.0
2091 Female, age 85, both hemispheres 218.4
2189 Female, age 91, both hemispheres 149.7
Peritrigeminal nucleus
nTPM: 572.8
2067 Female, age 85, both hemispheres 917.0
2136 Male, age 76, both hemispheres 427.1
2179 Male, age 61, both hemispheres 374.4
Prepositus hypoglossal nucleus
nTPM: 241.1
2086 Male, age 80, both hemispheres 312.9
2855 Female, age 85, right hemisphere 169.2
Spinal trigeminal nucleus, caudal
nTPM: 344.8
2642 Male, age 74, both hemispheres 499.3
2308 Male, age 80, both hemispheres 438.5
2312 Male, age 61, both hemispheres 364.5
2447 Male, age 76, both hemispheres 291.7
2390 Female, age 91, both hemispheres 129.8
Spinal trigeminal nucleus, interpolar
nTPM: 256.6
2386 Female, age 85, both hemispheres 469.1
2625 Male, age 61, both hemispheres 230.8
2066 Male, age 76, right hemisphere 221.5
2033 Male, age 80, both hemispheres 220.7
2389 Female, age 91, both hemispheres 140.6
Spinal vestibular nucleus
nTPM: 202.9
2748 Male, age 76, both hemispheres 271.6
2796 Male, age 61, both hemispheres 238.5
2780 Male, age 80, both hemispheres 208.1
2806 Female, age 85, both hemispheres 185.9
2186 Female, age 91, both hemispheres 161.6
2384 Male, age 74, both hemispheres 151.6
Superior vestibular nucleus
nTPM: 263.6
2061 Male, age 76, both hemispheres 277.0
2383 Male, age 74, both hemispheres 264.0
2015 Male, age 80, both hemispheres 249.8
Ventral medullary reticular nucleus
nTPM: 422.4
2372 Male, age 61, both hemispheres 534.0
2060 Male, age 76, both hemispheres 310.8
Ventrolateral medulla, A1-C1 cell groups
nTPM: 374.8
2741 Female, age 85, both hemispheres 521.2
2302 Female, age 91, both hemispheres 399.8
2180 Male, age 61, both hemispheres 347.9
1986 Male, age 76, both hemispheres 320.8
2118 Male, age 80, both hemispheres 284.5

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

253.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 253.9
FF:10038-101F2 18-64 years, mixed 406.5
FF:10174-103C3 60 years, female 211.9
FF:10155-103A2 76 years, female 143.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 7.2
Samples: 4

Max nTPM: 14.4
Min nTPM: 1.2
Sample A Female 8.7
Sample B Female 4.3
Sample C Male 1.2
Sample D Male 14.4

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