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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:197.5 nTPM
HPA Brain:154.0 nTPM
GTEx:197.5 nTPM
FANTOM5:55.8 Scaled Tags Per Million
Pig:44.9 nTPM
Mouse:170.5 nTPM
Allen mouse:13.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.0
Sample id Sample description nTPM
Amygdala
nTPM: 111.3
2814 Male, age 76, right hemisphere 142.1
1987 Female, age 91, left hemisphere 128.4
2517 Female, age 94, left hemisphere 123.0
2514 Male, age 75, right hemisphere 88.8
2695 Female, age 67, right hemisphere 74.1
Basal amygdala
nTPM: 154.0
2243 Female, age 91, right hemisphere 184.2
2827 Female, age 67, right hemisphere 164.6
2685 Female, age 94, left hemisphere 163.7
2110 Male, age 80, left hemisphere 148.0
1955 Male, age 76, both hemispheres 132.5
2609 Male, age 75, right hemisphere 131.0
Central amygdala
nTPM: 142.4
2826 Female, age 94, left hemisphere 197.0
2239 Male, age 80, left hemisphere 155.9
1905 Male, age 76, both hemispheres 127.2
2515 Male, age 75, right hemisphere 117.9
2701 Female, age 91, right hemisphere 113.8
Corticomedial amygdala
nTPM: 145.2
2829 Male, age 80, left hemisphere 178.4
2242 Female, age 91, right hemisphere 159.5
2535 Female, age 67, right hemisphere 152.3
2429 Female, age 94, left hemisphere 138.0
2428 Male, age 75, right hemisphere 123.3
2240 Male, age 76, both hemispheres 119.8
Lateral amygdala
nTPM: 141.5
2534 Female, age 94, left hemisphere 224.1
2256 Male, age 80, left hemisphere 149.5
2255 Female, age 91, right hemisphere 134.1
1883 Male, age 76, both hemispheres 130.6
2830 Female, age 67, right hemisphere 125.4
2516 Male, age 75, right hemisphere 85.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

197.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 197.5
Samples: 152

Max nTPM: 542.5
Min nTPM: 9.7
Std nTPM: 87.7
Median nTPM: 191.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 542.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 495.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 381.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 378.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 377.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 368.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 359.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 344.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 327.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 321.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 320.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 317.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 312.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 310.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 310.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 308.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 306.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 304.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 300.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 300.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 298.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 288.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 284.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 284.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 283.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 281.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 280.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 277.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 273.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 265.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 264.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 260.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 259.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 257.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 257.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 254.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 253.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 252.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 249.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 245.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 242.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 242.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 240.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 239.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 239.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 237.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 236.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 235.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 233.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 232.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 229.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 228.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 226.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 226.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 226.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 224.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 224.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 224.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 222.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 221.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 220.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 218.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 217.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 211.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 207.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 206.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 204.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 203.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 203.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 200.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 199.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 198.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 194.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 193.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 192.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 192.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 191.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 189.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 187.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 187.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 185.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 184.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 182.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 182.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 181.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 179.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 179.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 178.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 178.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 174.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 173.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 168.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 165.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 164.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 163.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 162.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 161.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 158.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 155.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 155.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 151.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 148.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 147.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 145.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 145.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 143.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 143.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 141.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 140.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 140.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 138.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 135.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 133.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 133.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 132.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 130.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 130.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 127.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 126.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 126.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 118.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 117.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 116.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 113.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 113.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 113.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 110.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 109.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 109.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 105.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 101.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 101.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 97.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 96.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 96.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 96.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 95.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 95.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 95.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 92.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 88.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 84.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 81.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 78.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 68.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 67.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 54.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 54.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 50.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 50.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 21.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 9.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

55.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 55.8
FF:10151-102I7 76 years, female 55.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.9
Pig sample Sample description nTPM
Amygdala
nTPM: 44.9
Samples: 4

Max nTPM: 70.2
Min nTPM: 29.2
Sample A Female 70.2
Sample B Female 29.2
Sample C Male 42.1
Sample D Male 37.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

170.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 170.5
Samples: 4

Max nTPM: 178.2
Min nTPM: 162.1
Sample A Male 173.5
Sample B Male 168.3
Sample C Female 178.2
Sample D Female 162.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.4
69782963 Antisense, RP_050505_04_B02, Mouse strain C57BL/6J (56 days, male) 13.4

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