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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:373.4 nTPM
HPA:373.4 nTPM
GTEx:285.1 nTPM
FANTOM5:243.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA070412
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

373.4
overview
Male, age 65
Small intestine sample 232
nTPM: 398.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 359.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 314.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 421.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

285.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 285.1
Samples: 187

Max nTPM: 674.4
Min nTPM: 134.4
Std nTPM: 97.3
Median nTPM: 266.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 674.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 519.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 516.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 508.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 507.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 504.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 502.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 486.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 460.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 445.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 444.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 440.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 437.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 436.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 432.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 430.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 425.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 424.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 422.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 421.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 421.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 418.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 418.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 413.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 412.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 411.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 409.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 407.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 404.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 404.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 402.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 398.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 394.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 393.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 392.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 391.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 382.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 377.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 373.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 373.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 368.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 364.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 359.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 358.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 356.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 350.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 346.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 346.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 340.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 334.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 334.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 332.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 330.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 328.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 328.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 327.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 320.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 317.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 317.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 316.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 315.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 312.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 312.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 311.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 306.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 305.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 304.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 304.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 303.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 299.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 294.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 293.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 291.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 288.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 285.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 285.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 279.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 279.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 278.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 277.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 277.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 277.7
GTEX-1192X-2526-SM-59868 50-59 years, male 276.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 275.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 274.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 274.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 272.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 271.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 269.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 269.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 268.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 267.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 266.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 266.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 265.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 265.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 264.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 263.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 262.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 261.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 258.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 258.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 257.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 255.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 254.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 247.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 245.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 245.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 245.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 242.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 240.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 240.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 240.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 239.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 238.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 238.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 237.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 236.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 236.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 233.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 233.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 233.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 230.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 229.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 227.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 226.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 226.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 226.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 225.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 224.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 224.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 222.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 220.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 220.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 217.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 215.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 214.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 213.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 213.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 212.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 212.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 210.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 209.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 209.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 207.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 203.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 203.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 202.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 201.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 200.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 199.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 197.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 197.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 195.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 194.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 193.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 193.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 192.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 190.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 188.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 187.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 185.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 184.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 183.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 182.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 178.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 176.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 172.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 171.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 170.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 170.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 167.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 166.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 166.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 160.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 158.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 158.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 157.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 154.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 153.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 151.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 151.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 151.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 148.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 137.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 137.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 134.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

243.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 243.5
FF:10024-101D6 15,40,85 years, mixed 243.5

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