BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.7 nTPM
HPA Brain:25.6 nTPM
GTEx:52.7 nTPM
FANTOM5:67.9 Scaled Tags Per Million
Pig:1.6 nTPM
Mouse:5.0 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 25.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 21.3
2846 Female, age 79, unknown 35.8
1857 Female, age 85, left hemisphere 32.9
2290 Female, age 72, unknown 25.3
1854 Male, age 80, left hemisphere 24.8
1781 Male, age 74, unknown 20.8
2288 Male, age 75, left hemisphere 12.8
2481 Female, age 94, left hemisphere 9.1
2289 Male, age 61, right hemisphere 8.9
Globus pallidus, externus
nTPM: 2.9
2395 Male, age 75, both hemispheres 3.9
2567 Female, age 72, unknown 3.4
2646 Male, age 61, right hemisphere 3.1
2772 Female, age 79, unknown 2.7
1996 Male, age 80, right hemisphere 1.5
Globus pallidus, internus
nTPM: 2.8
2483 Female, age 94, right hemisphere 4.7
2287 Male, age 75, right hemisphere 3.8
2566 Female, age 72, unknown 3.7
2037 Male, age 80, right hemisphere 2.8
2111 Female, age 85, right hemisphere 2.0
2778 Female, age 91, both hemispheres 1.5
1818 Male, age 74, unknown 1.3
Nucleus accumbens
nTPM: 18.8
1856 Female, age 91, right hemisphere 36.4
1783 Male, age 74, unknown 31.6
1806 Female, age 85, left hemisphere 30.5
2698 Female, age 72, unknown 19.3
2824 Male, age 61, right hemisphere 10.2
2391 Female, age 94, left hemisphere 9.2
2286 Male, age 75, left hemisphere 7.6
2732 Male, age 80, right hemisphere 6.0
Nucleus basalis of Meynert
nTPM: 14.4
2393 Male, age 80, right hemisphere 33.8
2484 Female, age 94, left hemisphere 13.0
2821 Male, age 75, both hemispheres 7.1
2569 Male, age 61, both hemispheres 3.8
Nucleus of the diagonal band
nTPM: 8.3
1812 Female, age 91, both hemispheres 12.0
2195 Female, age 85, both hemispheres 9.9
2775 Male, age 80, right hemisphere 9.6
1979 Male, age 74, unknown 5.5
2029 Male, age 61, right hemisphere 4.6
Putamen
nTPM: 25.6
1937 Female, age 91, right hemisphere 41.5
1838 Male, age 80, right hemisphere 35.7
2466 Female, age 79, unknown 29.7
1829 Male, age 74, unknown 24.8
2489 Female, age 72, unknown 20.4
2482 Female, age 94, left hemisphere 17.5
2647 Male, age 75, left hemisphere 9.6
Septal nuclei
nTPM: 8.6
1960 Male, age 74, unknown 15.4
2031 Female, age 72, unknown 12.0
2629 Female, age 94, right hemisphere 9.4
2009 Female, age 91, both hemispheres 8.2
2059 Female, age 85, both hemispheres 7.2
2199 Male, age 80, right hemisphere 4.2
2394 Male, age 61, left hemisphere 3.4
Stria terminalis, bed nucleus
nTPM: 10.3
2201 Male, age 74, unknown 12.0
1974 Female, age 91, both hemispheres 10.4
2486 Female, age 94, both hemispheres 8.3

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 52.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.9
Samples: 246

Max nTPM: 193.5
Min nTPM: 0.7
Std nTPM: 28.7
Median nTPM: 41.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 193.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 132.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 125.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 122.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 112.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 109.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 103.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 103.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 100.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 96.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 95.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 19.8
Samples: 246

Max nTPM: 110.6
Min nTPM: 1.2
Std nTPM: 14.7
Median nTPM: 16.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 110.6
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 103.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 79.9
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 66.7
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 58.9
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 54.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 54.2
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 51.9
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 49.8
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 47.7
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 45.1
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Brain - Putamen (basal ganglia)
Average nTPM: 52.7
Samples: 205

Max nTPM: 187.3
Min nTPM: 3.2
Std nTPM: 35.1
Median nTPM: 52.7
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 187.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 170.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 162.5
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 136.3
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 125.0
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 120.2
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 118.8
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 112.3
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 110.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 109.0
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 106.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 67.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 61.3
FF:10164-103B2 76 years, female 61.3
Nucleus accumbens
Scaled Tags Per Million: 36.1
FF:10037-101F1 23-56 years, mixed 36.1
Putamen
Scaled Tags Per Million: 67.9
FF:10176-103C5 60 years, female 67.9
Globus pallidus
Scaled Tags Per Million: 16.7
FF:10175-103C4 60 years, female 27.4
FF:10161-103A8 76 years, female 6.1

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 1.6
Pig sample Sample description nTPM
Caudate
nTPM: 1.6
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.2
Sample A Female 1.9
Sample B Female 2.0
Sample C Male 1.3
Sample D Male 1.2
Putamen
nTPM: 1.2
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 1.2
Sample C Male 1.2
Sample D Male 1.9
Septum
nTPM: 1.2
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.3
Sample A Female 1.9
Sample B Female 1.6
Sample C Male 0.9
Sample D Male 0.3
Ventral pallidum
nTPM: 1.4
Samples: 4

Max nTPM: 1.8
Min nTPM: 1.1
Sample A Female 1.8
Sample B Female 1.2
Sample C Male 1.4
Sample D Male 1.1

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 5.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.5
Samples: 4

Max nTPM: 3.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 3.0
Sample D Female 3.1
Septum
nTPM: 3.0
Samples: 4

Max nTPM: 5.4
Min nTPM: 0.4
Sample A Male 5.4
Sample B Male 2.2
Sample C Female 4.0
Sample D Female 0.4
Ventral forebrain
nTPM: 5.1
Samples: 4

Max nTPM: 6.4
Min nTPM: 2.0
Sample A Male 6.4
Sample B Male 2.0
Sample C Female 5.4
Sample D Female 6.4

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
69568968 Antisense, RP_050426_03_B11, Mouse strain C57BL/6J (56 days, male) 0.3
72472766 Antisense, RP_051101_02_C12, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69568968 Antisense, RP_050426_03_B11, Mouse strain C57BL/6J (56 days, male) 0.1
72472766 Antisense, RP_051101_02_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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