MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:254.1 nTPM
HPA Brain:144.6 nTPM
GTEx:254.1 nTPM
FANTOM5:110.1 Scaled Tags Per Million
Pig:4.9 nTPM
Mouse:540.8 nTPM
Allen mouse:14.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 144.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 110.5
2019 Male, age 18, unknown 140.8
2411 Female, age 72, unknown 134.5
1827 Male, age 72, unknown 124.4
1870 Female, age 42, unknown 109.3
1833 Male, age 53, unknown 107.5
2219 Male, age 76, both hemispheres 106.4
1830 Male, age 51, unknown 101.1
2666 Male, age 74, left hemisphere 98.3
2828 Female, age 72, unknown 96.4
2586 Male, age 75, left hemisphere 86.5
Dorsal raphe nucleus
nTPM: 128.2
2298 Female, age 72, unknown 157.4
1828 Male, age 53, unknown 142.5
2047 Male, age 72, unknown 132.1
2016 Female, age 72, unknown 105.5
2750 Male, age 76, both hemispheres 103.9
Inferior colliculus
nTPM: 120.2
2097 Female, age 72, unknown 139.2
1890 Male, age 53, unknown 126.5
1848 Female, age 42, unknown 117.0
2849 Male, age 72, unknown 98.3
Median raphe nucleus
nTPM: 96.9
2220 Male, age 76, midline 96.9
Periaquaductal grey, anterior
nTPM: 113.1
1947 Male, age 18, unknown 120.5
2502 Female, age 75, unknown 113.2
1795 Male, age 51, unknown 105.5
Periaquaductal grey, dorsal
nTPM: 96.5
1840 Male, age 53, unknown 101.3
2464 Female, age 72, unknown 97.8
1831 Male, age 72, unknown 94.7
2850 Male, age 76, both hemispheres 92.2
Periaquaductal grey, lateral
nTPM: 97.2
2272 Male, age 74, both hemispheres 111.1
2053 Male, age 18, unknown 98.3
2140 Male, age 76, both hemispheres 82.0
Pretectal area
nTPM: 123.0
1817 Female, age 42, unknown 154.0
2007 Male, age 72, unknown 149.7
1816 Male, age 51, unknown 145.1
1944 Female, age 72, unknown 140.7
1815 Male, age 53, unknown 125.5
2667 Female, age 75, unknown 121.5
2273 Male, age 74, both hemispheres 120.1
2224 Female, age 72, unknown 110.5
2316 Male, age 76, right hemisphere 99.0
2825 Male, age 18, unknown 98.3
2407 Male, age 75, both hemispheres 88.9
Red nucleus
nTPM: 117.7
1821 Female, age 72, unknown 178.5
2503 Female, age 72, unknown 126.0
2725 Female, age 75, unknown 120.0
2823 Male, age 76, right hemisphere 119.5
2785 Male, age 18, unknown 117.6
1865 Male, age 51, unknown 116.5
1954 Female, age 42, unknown 109.5
2588 Male, age 74, left hemisphere 108.9
2769 Male, age 72, unknown 108.6
2227 Male, age 72, unknown 107.7
1904 Male, age 53, unknown 103.7
2584 Male, age 75, left hemisphere 95.7
Substantia nigra
nTPM: 144.6
1916 Female, age 42, unknown 184.4
2241 Male, age 72, unknown 174.1
1851 Male, age 51, unknown 160.5
1941 Male, age 53, unknown 154.2
1889 Female, age 72, unknown 153.1
2409 Female, age 72, unknown 152.1
2665 Male, age 74, both hemispheres 137.1
2590 Female, age 75, unknown 121.0
2699 Male, age 18, unknown 118.2
2583 Male, age 75, right hemisphere 90.9
Superior colliculus
nTPM: 110.5
1895 Male, age 76, right hemisphere 135.4
2587 Male, age 74, left hemisphere 132.2
2668 Female, age 75, unknown 123.3
2087 Female, age 72, unknown 120.9
2261 Male, age 18, unknown 113.9
1796 Male, age 53, unknown 110.8
1839 Male, age 51, unknown 104.8
1913 Female, age 42, unknown 93.0
1995 Male, age 72, unknown 86.5
2664 Male, age 75, both hemispheres 84.1
Ventral tegmental area
nTPM: 120.0
2410 Female, age 72, unknown 148.6
1915 Female, age 42, unknown 143.2
2218 Male, age 76, both hemispheres 121.1
2223 Female, age 72, unknown 108.0
1942 Male, age 51, unknown 105.0
2021 Male, age 53, unknown 94.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 254.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 254.1
Samples: 139

Max nTPM: 518.2
Min nTPM: 106.1
Std nTPM: 67.2
Median nTPM: 245.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 518.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 467.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 439.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 421.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 397.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 389.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 387.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 384.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 376.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 374.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 373.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 110.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.1
FF:10158-103A5 76 years, female 110.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 4.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.2
Samples: 4

Max nTPM: 7.0
Min nTPM: 0.9
Sample A Female 0.9
Sample B Female 3.0
Sample C Male 2.0
Sample D Male 7.0
Midbrain
nTPM: 2.8
Samples: 4

Max nTPM: 4.2
Min nTPM: 1.8
Sample A Female 1.8
Sample B Female 4.2
Sample C Male 1.9
Sample D Male 3.3
Periaqueductal gray
nTPM: 4.9
Samples: 3

Max nTPM: 6.1
Min nTPM: 3.7
Sample B Female 4.8
Sample C Male 3.7
Sample D Male 6.1
Superior colliculi
nTPM: 3.2
Samples: 4

Max nTPM: 6.0
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 6.0
Sample C Male 1.8
Sample D Male 3.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 540.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 540.8
Samples: 4

Max nTPM: 573.1
Min nTPM: 523.6
Sample A Male 573.1
Sample B Male 528.0
Sample C Female 523.6
Sample D Female 538.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.9
576416 Antisense, RP_040826_01_G02, Mouse strain C57BL/6J (56 days, male) 16.5
1159 Antisense, RP_Baylor_253881, Mouse strain C57BL/6J (56 days, male) 13.3
1158 Antisense, RP_Baylor_253881, Mouse strain C57BL/6J (56 days, male) 10.4

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