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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:186.6 nTPM
HPA Brain:141.4 nTPM
GTEx:186.6 nTPM
FANTOM5:45.3 Scaled Tags Per Million
Pig:58.8 nTPM
Mouse:105.4 nTPM
Allen mouse:5.9 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.4
Sample id Sample description nTPM
Amygdala
nTPM: 88.1
2814 Male, age 76, right hemisphere 134.5
2517 Female, age 94, left hemisphere 105.8
1987 Female, age 91, left hemisphere 84.3
2695 Female, age 67, right hemisphere 60.7
2514 Male, age 75, right hemisphere 55.4
Basal amygdala
nTPM: 141.4
2685 Female, age 94, left hemisphere 197.9
2827 Female, age 67, right hemisphere 170.5
2243 Female, age 91, right hemisphere 140.8
2110 Male, age 80, left hemisphere 118.8
1955 Male, age 76, both hemispheres 110.3
2609 Male, age 75, right hemisphere 109.9
Central amygdala
nTPM: 138.7
2826 Female, age 94, left hemisphere 263.2
2239 Male, age 80, left hemisphere 127.1
1905 Male, age 76, both hemispheres 122.3
2701 Female, age 91, right hemisphere 105.2
2515 Male, age 75, right hemisphere 75.7
Corticomedial amygdala
nTPM: 117.6
2535 Female, age 67, right hemisphere 154.2
2829 Male, age 80, left hemisphere 148.6
2429 Female, age 94, left hemisphere 122.4
2242 Female, age 91, right hemisphere 110.9
2240 Male, age 76, both hemispheres 90.8
2428 Male, age 75, right hemisphere 78.7
Lateral amygdala
nTPM: 132.0
2534 Female, age 94, left hemisphere 229.9
2830 Female, age 67, right hemisphere 141.0
1883 Male, age 76, both hemispheres 117.0
2256 Male, age 80, left hemisphere 113.9
2255 Female, age 91, right hemisphere 111.2
2516 Male, age 75, right hemisphere 79.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

186.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 186.6
Samples: 152

Max nTPM: 807.1
Min nTPM: 27.0
Std nTPM: 94.0
Median nTPM: 175.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 807.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 523.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 404.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 390.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 387.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 386.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 347.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 339.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 325.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 323.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 311.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 306.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 302.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 300.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 294.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 294.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 291.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 289.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 284.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 282.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 274.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 273.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 264.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 260.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 259.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 250.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 239.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 235.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 233.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 233.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 232.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 226.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 225.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 224.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 223.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 222.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 222.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 221.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 219.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 218.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 216.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 215.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 214.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 214.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 213.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 210.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 208.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 207.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 206.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 205.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 204.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 203.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 201.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 201.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 200.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 199.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 198.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 195.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 194.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 193.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 190.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 190.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 189.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 189.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 187.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 186.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 183.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 183.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 181.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 181.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 180.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 179.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 178.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 177.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 177.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 176.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 175.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 175.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 174.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 174.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 173.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 171.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 169.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 168.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 167.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 166.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 164.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 163.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 162.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 162.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 161.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 158.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 157.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 157.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 154.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 153.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 153.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 150.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 149.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 148.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 141.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 140.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 140.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 138.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 138.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 138.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 137.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 134.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 133.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 133.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 131.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 129.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 129.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 128.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 127.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 126.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 125.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 123.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 121.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 114.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 112.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 112.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 112.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 110.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 110.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 109.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 108.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 105.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 105.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 104.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 102.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 102.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 100.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 99.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 93.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 93.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 93.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 92.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 90.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 86.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 81.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 80.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 72.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 70.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 70.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 69.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 66.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 65.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 62.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 62.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 47.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 27.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

45.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 45.3
FF:10151-102I7 76 years, female 45.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.8
Pig sample Sample description nTPM
Amygdala
nTPM: 58.8
Samples: 4

Max nTPM: 80.2
Min nTPM: 37.5
Sample A Female 80.2
Sample B Female 54.0
Sample C Male 63.5
Sample D Male 37.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 105.4
Samples: 4

Max nTPM: 122.2
Min nTPM: 95.8
Sample A Male 96.6
Sample B Male 106.9
Sample C Female 122.2
Sample D Female 95.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.9
79544844 Antisense, RP_071101_01_A06, Mouse strain C57BL/6J (56 days, male) 6.4
79556628 Antisense, RP_071101_01_A06, Mouse strain C57BL/6J (56 days, male) 5.6
2042 Antisense, RP_040324_01_C10, Mouse strain C57BL/6J (56 days, male) 5.4

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