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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:49.5 nTPM
HPA Brain:81.2 nTPM
GTEx:49.5 nTPM
FANTOM5:11.2 Scaled Tags Per Million
Pig:23.6 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 54.6
2194 Female, age 79, both hemispheres 98.3
1981 Female, age 72, midline 48.8
2048 Male, age 55, midline 46.5
2816 Male, age 47, midline 44.6
2565 Male, age 75, midline 34.6
Cervical spinal cord, dorsal horn
nTPM: 81.2
2721 Male, age 90, both hemispheres 171.9
2297 Male, age 75, both hemispheres 85.4
1877 Male, age 55, unknown 72.2
2069 Male, age 47, both hemispheres 66.8
2173 Female, age 72, unknown 51.6
2296 Male, age 66, both hemispheres 39.1
Cervical spinal cord, ventral horn
nTPM: 69.0
2820 Female, age 79, both hemispheres 119.6
2068 Male, age 55, unknown 94.1
2480 Male, age 75, both hemispheres 64.6
2295 Male, age 66, both hemispheres 63.8
2809 Male, age 90, both hemispheres 55.6
2098 Female, age 72, unknown 16.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 49.5
Samples: 159

Max nTPM: 125.7
Min nTPM: 3.7
Std nTPM: 23.6
Median nTPM: 46.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 125.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 116.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 108.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 107.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 107.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 104.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 96.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 96.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 96.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 92.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 91.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 89.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 86.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 83.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 82.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 81.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 80.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 79.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 75.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 74.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 74.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 74.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 74.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 74.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 72.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 70.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 70.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 70.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 70.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 69.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 69.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 67.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 67.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 65.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 64.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 64.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 64.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 63.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 63.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 63.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 61.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 61.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 60.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 60.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 60.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 60.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 59.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 59.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 59.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 58.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 58.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 57.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 56.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 55.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 55.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 54.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 54.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 54.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 54.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 53.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 51.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 51.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 51.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 51.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 50.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 50.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 50.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 50.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 50.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 50.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 49.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 49.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 49.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 49.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 49.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 47.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 46.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 46.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 46.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 46.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 46.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 45.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 45.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 45.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 45.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 44.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 44.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 44.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 43.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 42.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 42.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 42.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 42.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 41.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 41.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 41.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 41.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 41.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 41.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 41.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 40.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 40.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 39.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 39.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 39.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 39.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 39.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 38.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 38.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 38.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 37.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 36.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 36.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 35.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 35.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 35.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 34.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 34.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 34.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 34.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 33.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 32.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 31.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 31.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 31.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 31.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 31.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 29.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 29.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 28.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 28.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 28.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 27.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 27.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 27.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 26.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 26.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 25.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 25.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 25.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 24.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 23.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 18.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 18.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 17.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 17.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 17.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 16.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 16.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 15.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 14.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 14.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 12.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 11.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 11.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 11.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 5.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 5.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 3.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

11.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 11.2
FF:10181-103D1 60 years, female 15.6
FF:10159-103A6 76 years, female 6.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 22.5
Samples: 4

Max nTPM: 42.6
Min nTPM: 3.9
Sample A Female 42.6
Sample B Female 14.0
Sample C Male 3.9
Sample D Male 29.6
Ventral spinal cord
nTPM: 23.6
Samples: 4

Max nTPM: 31.1
Min nTPM: 10.6
Sample A Female 23.0
Sample B Female 31.1
Sample C Male 29.7
Sample D Male 10.6

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