MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.6 nTPM
HPA Brain:135.3 nTPM
GTEx:13.6 nTPM
FANTOM5:83.8 Scaled Tags Per Million
Pig:37.2 nTPM
Mouse:21.0 nTPM
Allen mouse:6.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 135.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 135.3
2219 Male, age 76, both hemispheres 214.4
1833 Male, age 53, unknown 149.4
1830 Male, age 51, unknown 148.9
2586 Male, age 75, left hemisphere 136.0
2666 Male, age 74, left hemisphere 128.9
2019 Male, age 18, unknown 127.0
1827 Male, age 72, unknown 115.5
2828 Female, age 72, unknown 114.9
1870 Female, age 42, unknown 109.7
2411 Female, age 72, unknown 107.9
Dorsal raphe nucleus
nTPM: 109.8
2750 Male, age 76, both hemispheres 135.0
1828 Male, age 53, unknown 111.6
2047 Male, age 72, unknown 107.3
2016 Female, age 72, unknown 106.7
2298 Female, age 72, unknown 88.2
Inferior colliculus
nTPM: 107.4
2849 Male, age 72, unknown 136.1
1890 Male, age 53, unknown 108.0
1848 Female, age 42, unknown 103.4
2097 Female, age 72, unknown 82.0
Median raphe nucleus
nTPM: 116.2
2220 Male, age 76, midline 116.2
Periaquaductal grey, anterior
nTPM: 123.7
1947 Male, age 18, unknown 144.6
2502 Female, age 75, unknown 113.5
1795 Male, age 51, unknown 113.0
Periaquaductal grey, dorsal
nTPM: 106.5
2850 Male, age 76, both hemispheres 111.7
2464 Female, age 72, unknown 110.2
1831 Male, age 72, unknown 102.9
1840 Male, age 53, unknown 101.3
Periaquaductal grey, lateral
nTPM: 124.2
2272 Male, age 74, both hemispheres 133.2
2140 Male, age 76, both hemispheres 123.3
2053 Male, age 18, unknown 116.2
Pretectal area
nTPM: 118.5
2407 Male, age 75, both hemispheres 160.6
2667 Female, age 75, unknown 143.5
2316 Male, age 76, right hemisphere 139.8
2825 Male, age 18, unknown 129.4
2273 Male, age 74, both hemispheres 120.5
2224 Female, age 72, unknown 113.4
1815 Male, age 53, unknown 109.2
2007 Male, age 72, unknown 108.2
1817 Female, age 42, unknown 96.3
1816 Male, age 51, unknown 92.2
1944 Female, age 72, unknown 90.1
Red nucleus
nTPM: 133.9
2823 Male, age 76, right hemisphere 171.7
2588 Male, age 74, left hemisphere 163.1
1865 Male, age 51, unknown 143.4
2584 Male, age 75, left hemisphere 142.3
2227 Male, age 72, unknown 132.1
1904 Male, age 53, unknown 132.0
2769 Male, age 72, unknown 129.4
2785 Male, age 18, unknown 129.0
2503 Female, age 72, unknown 126.0
2725 Female, age 75, unknown 122.9
1821 Female, age 72, unknown 108.6
1954 Female, age 42, unknown 105.8
Substantia nigra
nTPM: 110.5
2583 Male, age 75, right hemisphere 125.6
1941 Male, age 53, unknown 122.6
2699 Male, age 18, unknown 119.6
2241 Male, age 72, unknown 113.0
2409 Female, age 72, unknown 109.3
1851 Male, age 51, unknown 108.6
2590 Female, age 75, unknown 106.0
1889 Female, age 72, unknown 105.3
2665 Male, age 74, both hemispheres 100.5
1916 Female, age 42, unknown 94.9
Superior colliculus
nTPM: 123.0
1895 Male, age 76, right hemisphere 148.6
2664 Male, age 75, both hemispheres 142.2
1913 Female, age 42, unknown 140.9
1839 Male, age 51, unknown 131.0
2587 Male, age 74, left hemisphere 127.2
1995 Male, age 72, unknown 122.7
2668 Female, age 75, unknown 120.0
1796 Male, age 53, unknown 107.1
2261 Male, age 18, unknown 98.2
2087 Female, age 72, unknown 92.0
Ventral tegmental area
nTPM: 116.1
2223 Female, age 72, unknown 128.6
2218 Male, age 76, both hemispheres 126.6
1942 Male, age 51, unknown 123.0
2021 Male, age 53, unknown 112.4
2410 Female, age 72, unknown 104.4
1915 Female, age 42, unknown 101.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.6
Samples: 139

Max nTPM: 45.4
Min nTPM: 4.1
Std nTPM: 5.5
Median nTPM: 12.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 45.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 29.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 27.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 26.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 25.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 24.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 24.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 22.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 22.3
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 21.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 21.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 83.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.8
FF:10158-103A5 76 years, female 83.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.5
Samples: 4

Max nTPM: 51.1
Min nTPM: 28.5
Sample A Female 32.7
Sample B Female 28.5
Sample C Male 33.6
Sample D Male 51.1
Midbrain
nTPM: 37.2
Samples: 4

Max nTPM: 52.8
Min nTPM: 31.5
Sample A Female 52.8
Sample B Female 32.4
Sample C Male 31.5
Sample D Male 32.1
Periaqueductal gray
nTPM: 28.2
Samples: 3

Max nTPM: 30.9
Min nTPM: 25.1
Sample B Female 30.9
Sample C Male 25.1
Sample D Male 28.7
Superior colliculi
nTPM: 34.0
Samples: 4

Max nTPM: 40.6
Min nTPM: 24.3
Sample A Female 31.8
Sample B Female 24.3
Sample C Male 39.3
Sample D Male 40.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.0
Samples: 4

Max nTPM: 23.5
Min nTPM: 17.7
Sample A Male 17.7
Sample B Male 20.0
Sample C Female 23.5
Sample D Female 22.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.0
71281123 Antisense, RP_050818_02_B08, Mouse strain C57BL/6J (56 days, male) 7.7
71574522 Antisense, RP_050915_03_H04, Mouse strain C57BL/6J (56 days, male) 4.3

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