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C4orf48
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:141.6 nTPM
HPA Brain:171.9 nTPM
GTEx:141.6 nTPM
FANTOM5:68.2 Scaled Tags Per Million
Pig:28.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 171.9
1981 Female, age 72, midline 208.7
2194 Female, age 79, both hemispheres 206.0
2565 Male, age 75, midline 182.7
2816 Male, age 47, midline 156.7
2048 Male, age 55, midline 105.5
Cervical spinal cord, dorsal horn
nTPM: 165.8
2296 Male, age 66, both hemispheres 247.6
2173 Female, age 72, unknown 226.1
2069 Male, age 47, both hemispheres 171.3
1877 Male, age 55, unknown 148.1
2297 Male, age 75, both hemispheres 111.8
2721 Male, age 90, both hemispheres 89.7
Cervical spinal cord, ventral horn
nTPM: 163.1
2809 Male, age 90, both hemispheres 194.7
2068 Male, age 55, unknown 190.6
2480 Male, age 75, both hemispheres 176.7
2820 Female, age 79, both hemispheres 169.2
2295 Male, age 66, both hemispheres 125.5
2098 Female, age 72, unknown 121.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 141.6
Samples: 159

Max nTPM: 388.6
Min nTPM: 35.9
Std nTPM: 70.0
Median nTPM: 130.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 388.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 378.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 333.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 303.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 295.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 290.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 286.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 284.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 275.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 268.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 262.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 251.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 250.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 246.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 243.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 242.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 230.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 226.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 223.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 223.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 217.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 217.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 216.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 216.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 213.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 212.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 209.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 209.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 205.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 204.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 203.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 195.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 192.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 189.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 188.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 187.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 185.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 182.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 181.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 180.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 180.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 180.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 179.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 176.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 176.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 175.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 174.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 174.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 173.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 172.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 168.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 168.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 165.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 163.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 159.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 159.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 157.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 157.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 152.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 151.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 151.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 148.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 147.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 145.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 145.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 140.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 140.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 140.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 138.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 138.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 135.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 135.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 134.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 134.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 133.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 133.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 132.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 131.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 131.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 130.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 130.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 129.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 126.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 125.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 124.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 123.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 122.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 121.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 117.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 116.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 116.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 115.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 114.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 113.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 112.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 110.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 110.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 109.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 108.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 107.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 107.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 105.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 105.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 105.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 104.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 102.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 101.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 101.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 100.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 99.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 98.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 98.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 98.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 96.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 96.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 93.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 92.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 90.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 89.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 89.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 88.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 88.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 88.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 87.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 87.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 87.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 85.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 83.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 83.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 79.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 78.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 76.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 75.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 74.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 73.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 72.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 72.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 71.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 68.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 68.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 66.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 62.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 61.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 59.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 59.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 54.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 52.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 50.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 50.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 47.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 47.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 46.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 42.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 42.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 41.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 37.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 37.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 36.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 35.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

68.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 68.2
FF:10181-103D1 60 years, female 97.5
FF:10159-103A6 76 years, female 38.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 22.9
Samples: 4

Max nTPM: 36.9
Min nTPM: 13.5
Sample A Female 36.9
Sample B Female 19.2
Sample C Male 13.5
Sample D Male 22.0
Ventral spinal cord
nTPM: 28.5
Samples: 4

Max nTPM: 36.7
Min nTPM: 18.9
Sample A Female 35.2
Sample B Female 36.7
Sample C Male 23.0
Sample D Male 18.9

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