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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:35.0 nTPM
HPA Brain:14.8 nTPM
GTEx:35.0 nTPM
FANTOM5:35.6 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 7.9
2194 Female, age 79, both hemispheres 11.1
2565 Male, age 75, midline 9.7
1981 Female, age 72, midline 9.3
2816 Male, age 47, midline 6.0
2048 Male, age 55, midline 3.5
Cervical spinal cord, dorsal horn
nTPM: 9.0
2297 Male, age 75, both hemispheres 13.7
1877 Male, age 55, unknown 12.3
2721 Male, age 90, both hemispheres 7.8
2069 Male, age 47, both hemispheres 7.4
2173 Female, age 72, unknown 7.1
2296 Male, age 66, both hemispheres 5.7
Cervical spinal cord, ventral horn
nTPM: 14.8
2098 Female, age 72, unknown 27.8
2809 Male, age 90, both hemispheres 21.9
2480 Male, age 75, both hemispheres 21.6
2295 Male, age 66, both hemispheres 9.4
2068 Male, age 55, unknown 5.9
2820 Female, age 79, both hemispheres 2.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

35.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 35.0
Samples: 159

Max nTPM: 435.4
Min nTPM: 2.3
Std nTPM: 53.5
Median nTPM: 14.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 435.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 236.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 218.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 179.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 169.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 159.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 152.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 131.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 128.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 124.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 123.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 122.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 119.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 114.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 105.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 101.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 89.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 88.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 88.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 87.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 77.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 75.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 71.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 60.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 59.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 56.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 56.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 53.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 51.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 51.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 50.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 50.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 49.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 46.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 44.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 42.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 42.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 40.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 40.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 39.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 39.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 38.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 38.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 37.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 35.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 32.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 32.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 31.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 31.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 30.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 29.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 26.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 25.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 25.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 24.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 23.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 23.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 23.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 22.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 21.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 20.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 20.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 20.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 19.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 19.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 19.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 18.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 18.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 18.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 18.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 17.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 17.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 17.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 17.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 16.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 15.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 15.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 14.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 14.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 14.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 14.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 14.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 14.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 14.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 13.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 13.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 12.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 12.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 12.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 11.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 11.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 11.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 10.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 10.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 10.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 10.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 10.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 10.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 10.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 10.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 9.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 9.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 9.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 9.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 8.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 8.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 8.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 8.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 8.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 8.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 7.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 7.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 7.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 7.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 7.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 7.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 7.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 7.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 7.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 7.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 6.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 6.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 6.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 6.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 6.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 6.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 6.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 6.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 6.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 5.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 5.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 5.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 5.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 5.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 5.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 5.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 5.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 5.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 4.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 4.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 4.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 4.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 4.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 4.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 4.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 4.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 4.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 3.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 3.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 3.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 3.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 3.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 3.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 3.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 3.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 2.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 2.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 2.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

35.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 35.6
FF:10181-103D1 60 years, female 50.6
FF:10159-103A6 76 years, female 20.6

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