We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
NME2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • NME2
TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:449.7 nTPM
GTEx:449.7 nTPM
FANTOM5:681.1 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041113
Squamous epithelial cells Medium

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

449.7
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 449.7
Samples: 156

Max nTPM: 1336.0
Min nTPM: 204.6
Std nTPM: 134.7
Median nTPM: 429.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 1336.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 830.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 745.7
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 745.1
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 736.7
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 709.5
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 701.0
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 691.2
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 647.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 639.8
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 624.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 619.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 613.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 598.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 594.1
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 593.6
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 592.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 588.5
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 580.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 580.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 579.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 572.5
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 566.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 565.3
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 563.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 560.6
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 560.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 554.5
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 548.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 547.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 536.4
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 535.9
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 534.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 530.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 522.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 521.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 521.4
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 518.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 515.7
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 514.4
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 513.8
GTEX-S341-1226-SM-4AD5S 40-49 years, female 512.3
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 511.1
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 503.0
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 497.4
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 495.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 494.2
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 493.7
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 492.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 491.0
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 489.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 482.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 481.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 481.0
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 480.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 479.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 476.8
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 474.7
GTEX-11I78-2026-SM-5987C 50-59 years, female 474.6
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 472.8
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 471.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 466.8
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 464.2
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 462.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 461.8
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 459.6
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 456.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 452.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 447.2
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 443.9
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 443.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 441.7
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 441.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 439.4
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 432.7
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 432.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 431.8
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 431.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 428.4
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 428.3
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 428.2
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 427.8
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 427.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 420.6
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 420.4
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 419.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 418.7
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 417.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 413.9
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 410.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 409.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 408.5
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 408.2
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 408.1
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 406.5
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 404.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 403.9
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 400.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 399.5
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 396.6
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 390.5
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 389.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 388.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 387.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 386.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 385.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 382.6
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 381.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 379.8
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 378.6
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 378.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 375.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 372.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 372.7
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 372.5
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 369.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 364.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 358.8
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 352.0
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 348.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 347.2
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 345.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 344.2
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 344.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 342.4
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 339.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 336.5
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 334.9
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 333.7
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 331.8
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 329.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 328.6
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 328.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 321.5
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 320.6
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 317.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 315.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 315.2
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 315.0
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 311.3
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 310.6
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 308.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 307.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 307.1
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 302.1
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 299.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 297.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 295.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 280.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 271.0
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 270.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 256.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 238.5
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 238.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 218.9
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 204.6
Show allShow less

VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

681.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 681.1
FF:10204-103F6 68 years, female 681.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org