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BRAIN WHITE MATTER Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
WHITE MATTER - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:215.2 nTPM
FANTOM5:1.0 Scaled Tags Per Million

WHITE MATTER - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

215.2
Sample id Sample description nTPM
Angular gyrus (white matter)
nTPM: 174.1
1920 Male, age 76, both hemispheres 174.1
Anterior funiculus (white matter)
nTPM: 152.7
2818 Female, age 79, both hemispheres 167.5
2734 Male, age 80, both hemispheres 160.8
2819 Male, age 47, both hemispheres 143.4
2193 Male, age 75, both hemispheres 139.3
Area striata (white matter)
nTPM: 190.6
2258 Female, age 91, left hemisphere 190.6
Cerebellar white matter
nTPM: 161.2
1864 Male, age 80, left hemisphere 214.8
1931 Female, age 91, left hemisphere 164.6
2773 Female, age 85, right hemisphere 163.6
1837 Male, age 76, left hemisphere 161.2
2174 Male, age 61, right hemisphere 136.8
2105 Male, age 74, right hemisphere 126.0
Corpus callosum, genu (white matter)
nTPM: 172.3
1887 Male, age 76, left hemisphere 217.1
1934 Male, age 61, right hemisphere 172.5
1849 Female, age 91, right hemisphere 170.6
2771 Male, age 75, left hemisphere 170.4
1886 Female, age 67, right hemisphere 162.9
1885 Female, age 94, left hemisphere 140.4
Corpus callosum, splenium (white matter)
nTPM: 172.1
1946 Male, age 76, left hemisphere 210.7
2104 Male, age 75, left hemisphere 178.8
2238 Female, age 94, right hemisphere 178.5
2847 Female, age 67, right hemisphere 120.5
Dorsal funiculus (white matter)
nTPM: 152.2
2817 Male, age 47, both hemispheres 159.5
2810 Male, age 90, both hemispheres 157.1
2064 Female, age 79, both hemispheres 155.0
2128 Male, age 75, both hemispheres 146.8
2812 Male, age 66, both hemispheres 142.6
Lateral funiculus (white matter)
nTPM: 153.4
2294 Male, age 66, both hemispheres 173.5
2192 Male, age 75, both hemispheres 158.7
2094 Female, age 79, both hemispheres 142.5
2099 Male, age 90, both hemispheres 138.9
Occipital cortex (white matter)
nTPM: 175.9
2257 Female, age 67, both hemispheres 196.0
2259 Male, age 75, midline 155.8
Parahippocampal cortex (white matter)
nTPM: 177.2
2157 Female, age 91, both hemispheres 177.2
Parieto-temporal junction (white matter)
nTPM: 196.2
2121 Male, age 76, left hemisphere 226.1
2770 Female, age 91, right hemisphere 221.2
2774 Male, age 61, right hemisphere 203.8
2469 Male, age 75, right hemisphere 197.4
1999 Female, age 67, right hemisphere 166.0
1935 Female, age 94, right hemisphere 162.8
Somatomor cortex, precentral gyrus (white matter)
nTPM: 189.0
2439 Male, age 75, right hemisphere 189.0
Somatosensory cortex, postcentral gyrus, ventral (white matter)
nTPM: 190.9
2623 Male, age 75, right hemisphere 190.9
Temporal white matter
nTPM: 215.2
2524 Female, age 85, left hemisphere 304.7
2254 Male, age 75, right hemisphere 231.2
2523 Female, age 94, left hemisphere 193.9
1801 Male, age 76, left hemisphere 183.6
2736 Female, age 91, right hemisphere 162.8

WHITE MATTER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Corpus callosum
Scaled Tags Per Million: 1.0
FF:10042-101F6 24-68 years, mixed 1.0

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