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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:470.6 nTPM
HPA Brain:459.2 nTPM
GTEx:470.6 nTPM
FANTOM5:205.4 Scaled Tags Per Million
Pig:39.1 nTPM
Mouse:109.9 nTPM
Allen mouse:22.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

459.2
Sample id Sample description nTPM
Amygdala
nTPM: 459.2
2814 Male, age 76, right hemisphere 644.2
2514 Male, age 75, right hemisphere 486.1
2695 Female, age 67, right hemisphere 484.0
2517 Female, age 94, left hemisphere 387.4
1987 Female, age 91, left hemisphere 294.5
Basal amygdala
nTPM: 326.6
2827 Female, age 67, right hemisphere 403.2
2685 Female, age 94, left hemisphere 390.9
2110 Male, age 80, left hemisphere 360.1
2609 Male, age 75, right hemisphere 327.1
1955 Male, age 76, both hemispheres 315.4
2243 Female, age 91, right hemisphere 163.1
Central amygdala
nTPM: 384.6
1905 Male, age 76, both hemispheres 491.4
2826 Female, age 94, left hemisphere 481.9
2701 Female, age 91, right hemisphere 329.4
2239 Male, age 80, left hemisphere 318.4
2515 Male, age 75, right hemisphere 301.9
Corticomedial amygdala
nTPM: 232.2
2428 Male, age 75, right hemisphere 319.8
2429 Female, age 94, left hemisphere 273.0
2535 Female, age 67, right hemisphere 240.1
2240 Male, age 76, both hemispheres 237.0
2829 Male, age 80, left hemisphere 209.7
2242 Female, age 91, right hemisphere 113.3
Lateral amygdala
nTPM: 438.6
2830 Female, age 67, right hemisphere 543.5
1883 Male, age 76, both hemispheres 471.7
2516 Male, age 75, right hemisphere 456.6
2256 Male, age 80, left hemisphere 441.1
2534 Female, age 94, left hemisphere 421.2
2255 Female, age 91, right hemisphere 297.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

470.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 470.6
Samples: 152

Max nTPM: 1940.1
Min nTPM: 62.5
Std nTPM: 277.7
Median nTPM: 384.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1940.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1430.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1427.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1291.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1237.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1163.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 980.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 969.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 957.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 896.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 877.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 855.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 823.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 810.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 796.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 788.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 782.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 756.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 734.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 721.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 713.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 710.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 707.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 693.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 687.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 681.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 676.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 671.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 666.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 664.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 654.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 651.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 651.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 650.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 638.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 636.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 601.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 599.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 592.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 586.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 586.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 578.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 561.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 556.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 543.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 538.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 529.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 528.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 515.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 514.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 504.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 503.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 495.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 492.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 486.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 478.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 473.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 472.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 466.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 457.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 454.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 447.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 445.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 444.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 442.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 442.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 430.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 421.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 418.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 408.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 402.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 401.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 397.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 393.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 386.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 385.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 382.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 380.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 379.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 373.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 364.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 363.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 359.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 358.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 353.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 353.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 351.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 345.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 341.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 338.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 335.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 335.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 335.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 330.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 326.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 324.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 320.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 318.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 317.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 315.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 314.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 313.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 312.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 311.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 311.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 310.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 309.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 307.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 306.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 305.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 304.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 304.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 301.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 296.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 291.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 290.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 288.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 287.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 286.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 285.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 283.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 280.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 276.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 268.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 261.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 255.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 253.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 251.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 239.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 228.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 226.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 225.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 224.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 224.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 221.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 221.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 221.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 218.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 218.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 216.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 208.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 204.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 204.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 187.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 178.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 176.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 164.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 161.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 150.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 147.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 140.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 62.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

205.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 205.4
FF:10151-102I7 76 years, female 205.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.1
Pig sample Sample description nTPM
Amygdala
nTPM: 39.1
Samples: 4

Max nTPM: 43.7
Min nTPM: 30.7
Sample A Female 43.5
Sample B Female 43.7
Sample C Male 38.5
Sample D Male 30.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 109.9
Samples: 4

Max nTPM: 130.1
Min nTPM: 100.3
Sample A Male 100.4
Sample B Male 108.8
Sample C Female 130.1
Sample D Female 100.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.0
45668 Antisense, RP_040324_01_H05, Mouse strain C57BL/6J (56 days, male) 22.0
67936386 Antisense, RP_040324_01_H05, Mouse strain C57BL/6J (56 days, male) 10.2

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