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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:121.7 nTPM
GTEx:860.5 nTPM
FANTOM5:124.3 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043234Antibody CAB009526
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

121.7
Sample id Sample description nTPM
Hippocampus
nTPM: 121.7
1911 Female, age 85, right hemisphere 206.9
2148 Female, age 91, left hemisphere 130.6
1898 Male, age 80, left hemisphere 127.4
2529 Female, age 94, left hemisphere 100.2
2621 Female, age 67, right hemisphere 93.3
1855 Male, age 76, left hemisphere 71.9

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

860.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 860.5
Samples: 197

Max nTPM: 8907.3
Min nTPM: 25.8
Std nTPM: 1113.9
Median nTPM: 487.4
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 8907.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 5737.8
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 4789.7
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 4618.4
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 4410.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 3662.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 3549.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 3311.6
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 3307.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 3248.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 3193.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 3090.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 2839.6
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 2684.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 2469.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 2291.5
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 2144.2
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 1995.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 1994.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 1894.1
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 1840.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 1830.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 1786.3
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 1766.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 1737.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 1711.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 1637.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 1593.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 1545.5
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 1545.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 1528.2
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 1481.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 1420.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 1408.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 1371.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 1345.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 1312.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 1285.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 1280.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 1279.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 1260.8
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 1252.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 1197.9
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 1113.0
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 1100.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 1073.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 1069.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 1047.3
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 1046.0
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 1043.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 1031.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 991.5
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 991.2
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 990.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 984.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 942.4
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 914.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 883.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 881.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 863.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 855.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 844.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 828.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 815.5
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 808.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 800.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 796.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 771.3
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 754.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 740.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 729.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 723.9
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 721.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 714.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 703.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 660.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 633.7
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 623.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 620.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 614.6
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 612.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 611.7
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 599.0
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 598.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 594.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 591.5
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 576.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 573.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 564.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 555.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 555.5
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 546.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 533.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 530.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 522.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 520.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 517.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 492.6
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 487.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 482.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 461.6
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 460.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 458.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 455.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 447.6
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 446.5
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 445.1
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 442.8
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 437.2
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 428.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 425.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 420.2
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 406.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 404.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 402.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 398.9
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 395.2
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 391.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 390.6
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 376.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 361.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 348.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 345.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 344.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 337.6
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 329.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 329.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 325.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 304.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 298.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 293.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 289.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 288.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 288.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 272.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 270.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 268.5
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 268.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 253.7
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 253.4
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 248.9
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 234.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 230.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 227.9
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 218.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 211.5
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 210.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 209.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 208.3
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 204.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 204.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 190.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 181.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 177.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 177.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 176.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 174.0
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 171.4
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 169.5
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 169.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 164.6
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 161.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 161.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 160.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 155.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 153.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 152.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 148.6
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 142.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 134.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 134.2
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 123.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 113.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 111.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 108.7
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 106.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 105.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 104.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 98.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 93.6
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 83.1
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 82.3
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 81.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 78.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 78.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 75.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 72.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 68.7
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 57.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 55.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 42.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 41.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 38.3
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 31.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 29.9
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 27.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 25.8
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

124.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 124.3
FF:10169-103B7 60 years, female 151.6
FF:10153-102I9 76 years, female 97.1

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org