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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:613.3 nTPM
GTEx:613.3 nTPM
FANTOM5:5370.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043234Antibody CAB009526
Squamous epithelial cells Not detectedNot detected





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

613.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 613.3
Samples: 156

Max nTPM: 9926.3
Min nTPM: 4.5
Std nTPM: 1478.8
Median nTPM: 136.2
GTEX-16NPV-2526-SM-6M483 50-59 years, female 9926.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 9137.1
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 7565.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 5693.0
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 5664.1
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 4686.9
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 4264.6
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 3184.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2789.1
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2430.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2281.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2127.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1422.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1363.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1228.0
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1107.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1067.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 934.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 899.1
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 882.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 873.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 859.9
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 830.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 817.5
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 817.3
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 811.4
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 769.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 730.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 707.7
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 661.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 619.5
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 609.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 600.8
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 590.8
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 551.9
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 521.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 510.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 500.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 447.8
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 415.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 404.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 403.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 399.2
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 392.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 388.3
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 385.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 383.9
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 377.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 323.9
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 299.7
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 279.4
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 275.9
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 269.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 268.7
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 259.6
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 236.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 235.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 234.5
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 232.7
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 228.7
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 223.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 219.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 213.7
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 199.8
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 197.1
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 193.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 192.7
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 182.8
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 182.3
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 172.3
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 172.0
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 169.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 167.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 160.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 159.7
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 146.4
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 139.3
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 138.3
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 134.1
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 128.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 123.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 121.5
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 118.4
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 112.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 109.5
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 108.9
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 106.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 104.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 103.1
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 100.7
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 99.8
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 98.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 96.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 94.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 94.1
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 92.6
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 89.5
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 85.4
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 85.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 84.1
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 79.2
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 75.8
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 75.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 70.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 69.1
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 67.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 64.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 58.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 58.1
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 57.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 57.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 55.9
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 55.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 55.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 51.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 50.5
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 48.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 48.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 48.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 47.3
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 45.1
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 44.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 43.7
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 40.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 38.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 35.0
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 33.5
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 33.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 32.8
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 31.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 31.2
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 31.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 30.7
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 24.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 23.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 23.1
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 20.2
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 18.4
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 17.2
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 16.6
GTEX-S341-1226-SM-4AD5S 40-49 years, female 15.5
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 15.1
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 14.7
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 13.2
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 11.1
GTEX-11I78-2026-SM-5987C 50-59 years, female 10.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 10.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 10.7
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 10.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 10.1
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 10.0
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 9.4
GTEX-QCQG-1226-SM-48U23 50-59 years, female 8.5
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 8.0
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 7.2
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 4.5
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

5370.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 5370.9
FF:10204-103F6 68 years, female 5370.9

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