MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.7 nTPM
HPA Brain:26.9 nTPM
GTEx:38.7 nTPM
FANTOM5:69.2 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 26.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.3
2666 Male, age 74, left hemisphere 34.5
2586 Male, age 75, left hemisphere 30.1
1870 Female, age 42, unknown 25.8
1827 Male, age 72, unknown 25.5
2828 Female, age 72, unknown 25.0
2219 Male, age 76, both hemispheres 23.7
1830 Male, age 51, unknown 23.4
1833 Male, age 53, unknown 23.2
2411 Female, age 72, unknown 22.4
2019 Male, age 18, unknown 19.3
Dorsal raphe nucleus
nTPM: 22.2
2750 Male, age 76, both hemispheres 23.0
2016 Female, age 72, unknown 22.9
2047 Male, age 72, unknown 22.8
1828 Male, age 53, unknown 22.3
2298 Female, age 72, unknown 20.1
Inferior colliculus
nTPM: 21.8
2849 Male, age 72, unknown 26.9
1890 Male, age 53, unknown 22.0
1848 Female, age 42, unknown 21.1
2097 Female, age 72, unknown 17.4
Median raphe nucleus
nTPM: 26.9
2220 Male, age 76, midline 26.9
Periaquaductal grey, anterior
nTPM: 24.6
1795 Male, age 51, unknown 24.9
2502 Female, age 75, unknown 24.7
1947 Male, age 18, unknown 24.1
Periaquaductal grey, dorsal
nTPM: 22.3
2850 Male, age 76, both hemispheres 25.8
2464 Female, age 72, unknown 21.4
1831 Male, age 72, unknown 21.0
1840 Male, age 53, unknown 21.0
Periaquaductal grey, lateral
nTPM: 22.8
2140 Male, age 76, both hemispheres 25.1
2053 Male, age 18, unknown 24.0
2272 Male, age 74, both hemispheres 19.3
Pretectal area
nTPM: 22.2
2825 Male, age 18, unknown 25.9
2407 Male, age 75, both hemispheres 23.8
2007 Male, age 72, unknown 23.3
1815 Male, age 53, unknown 22.9
2316 Male, age 76, right hemisphere 22.9
1816 Male, age 51, unknown 22.6
2224 Female, age 72, unknown 21.7
1817 Female, age 42, unknown 21.5
1944 Female, age 72, unknown 20.4
2273 Male, age 74, both hemispheres 19.9
2667 Female, age 75, unknown 18.7
Red nucleus
nTPM: 26.3
2725 Female, age 75, unknown 32.2
2503 Female, age 72, unknown 30.8
2588 Male, age 74, left hemisphere 30.3
2584 Male, age 75, left hemisphere 27.9
1865 Male, age 51, unknown 27.0
2227 Male, age 72, unknown 27.0
1904 Male, age 53, unknown 25.3
2769 Male, age 72, unknown 24.5
2823 Male, age 76, right hemisphere 23.4
2785 Male, age 18, unknown 23.3
1954 Female, age 42, unknown 23.0
1821 Female, age 72, unknown 20.5
Substantia nigra
nTPM: 22.3
2699 Male, age 18, unknown 28.0
2665 Male, age 74, both hemispheres 25.1
1941 Male, age 53, unknown 22.8
2583 Male, age 75, right hemisphere 22.4
1916 Female, age 42, unknown 22.2
1851 Male, age 51, unknown 21.9
2409 Female, age 72, unknown 21.9
2590 Female, age 75, unknown 21.4
1889 Female, age 72, unknown 20.0
2241 Male, age 72, unknown 17.2
Superior colliculus
nTPM: 23.3
2664 Male, age 75, both hemispheres 26.2
2587 Male, age 74, left hemisphere 24.4
1796 Male, age 53, unknown 24.0
1995 Male, age 72, unknown 23.5
1913 Female, age 42, unknown 23.1
2668 Female, age 75, unknown 22.8
1839 Male, age 51, unknown 22.7
2087 Female, age 72, unknown 22.5
1895 Male, age 76, right hemisphere 21.7
2261 Male, age 18, unknown 21.7
Ventral tegmental area
nTPM: 22.9
2218 Male, age 76, both hemispheres 24.1
2021 Male, age 53, unknown 24.0
2223 Female, age 72, unknown 23.7
1942 Male, age 51, unknown 23.5
1915 Female, age 42, unknown 22.1
2410 Female, age 72, unknown 20.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.7
Samples: 139

Max nTPM: 72.1
Min nTPM: 20.5
Std nTPM: 10.1
Median nTPM: 36.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 72.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 69.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 67.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 67.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 63.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 61.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 58.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 56.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 56.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 56.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 54.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 69.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.2
FF:10158-103A5 76 years, female 69.2

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