BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.6 nTPM
HPA Brain:3.1 nTPM
GTEx:9.6 nTPM
FANTOM5:14.5 Scaled Tags Per Million
Pig:1.6 nTPM
Mouse:7.8 nTPM
Allen mouse:1.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 3.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.3
2846 Female, age 79, unknown 5.3
2481 Female, age 94, left hemisphere 2.4
1854 Male, age 80, left hemisphere 2.3
2290 Female, age 72, unknown 2.3
1781 Male, age 74, unknown 1.8
2289 Male, age 61, right hemisphere 1.5
1857 Female, age 85, left hemisphere 1.4
2288 Male, age 75, left hemisphere 1.4
Globus pallidus, externus
nTPM: 2.5
2395 Male, age 75, both hemispheres 3.3
2772 Female, age 79, unknown 3.1
1996 Male, age 80, right hemisphere 2.6
2646 Male, age 61, right hemisphere 2.0
2567 Female, age 72, unknown 1.8
Globus pallidus, internus
nTPM: 2.8
1818 Male, age 74, unknown 3.3
2483 Female, age 94, right hemisphere 3.3
2037 Male, age 80, right hemisphere 3.1
2111 Female, age 85, right hemisphere 2.9
2287 Male, age 75, right hemisphere 2.7
2778 Female, age 91, both hemispheres 2.4
2566 Female, age 72, unknown 2.2
Nucleus accumbens
nTPM: 1.5
1783 Male, age 74, unknown 2.1
2698 Female, age 72, unknown 2.1
1806 Female, age 85, left hemisphere 1.8
1856 Female, age 91, right hemisphere 1.4
2732 Male, age 80, right hemisphere 1.4
2391 Female, age 94, left hemisphere 1.2
2286 Male, age 75, left hemisphere 1.1
2824 Male, age 61, right hemisphere 1.1
Nucleus basalis of Meynert
nTPM: 3.1
2821 Male, age 75, both hemispheres 3.8
2484 Female, age 94, left hemisphere 3.4
2569 Male, age 61, both hemispheres 3.2
2393 Male, age 80, right hemisphere 2.1
Nucleus of the diagonal band
nTPM: 1.3
2029 Male, age 61, right hemisphere 1.8
1812 Female, age 91, both hemispheres 1.4
1979 Male, age 74, unknown 1.2
2195 Female, age 85, both hemispheres 1.2
2775 Male, age 80, right hemisphere 1.1
Putamen
nTPM: 2.3
2466 Female, age 79, unknown 3.3
2482 Female, age 94, left hemisphere 3.3
2489 Female, age 72, unknown 3.1
1829 Male, age 74, unknown 1.9
1838 Male, age 80, right hemisphere 1.8
1937 Female, age 91, right hemisphere 1.7
2647 Male, age 75, left hemisphere 1.1
Septal nuclei
nTPM: 1.6
2394 Male, age 61, left hemisphere 2.7
2199 Male, age 80, right hemisphere 2.0
2031 Female, age 72, unknown 1.9
1960 Male, age 74, unknown 1.3
2059 Female, age 85, both hemispheres 1.3
2009 Female, age 91, both hemispheres 1.0
2629 Female, age 94, right hemisphere 0.8
Stria terminalis, bed nucleus
nTPM: 1.0
2201 Male, age 74, unknown 1.2
1974 Female, age 91, both hemispheres 1.1
2486 Female, age 94, both hemispheres 0.8

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 9.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.0
Samples: 246

Max nTPM: 37.3
Min nTPM: 0.9
Std nTPM: 5.4
Median nTPM: 5.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 37.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 27.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 26.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 23.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 22.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 22.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 21.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 20.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 20.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 19.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 19.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.0
Samples: 246

Max nTPM: 158.8
Min nTPM: 0.7
Std nTPM: 12.6
Median nTPM: 3.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 158.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 85.3
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 52.2
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 41.9
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 31.9
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 27.9
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 26.0
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 23.8
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 21.8
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 20.5
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 20.3
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Brain - Putamen (basal ganglia)
Average nTPM: 9.6
Samples: 205

Max nTPM: 59.2
Min nTPM: 0.0
Std nTPM: 8.3
Median nTPM: 6.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 59.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 41.1
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 41.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 35.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 34.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 32.1
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 31.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 30.9
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 29.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 28.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 26.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 5.7
FF:10164-103B2 76 years, female 5.7
Nucleus accumbens
Scaled Tags Per Million: 7.3
FF:10037-101F1 23-56 years, mixed 7.3
Putamen
Scaled Tags Per Million: 3.5
FF:10176-103C5 60 years, female 3.5
Globus pallidus
Scaled Tags Per Million: 14.5
FF:10175-103C4 60 years, female 18.8
FF:10161-103A8 76 years, female 10.2

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 1.6
Pig sample Sample description nTPM
Caudate
nTPM: 1.0
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.6
Sample A Female 1.2
Sample B Female 0.6
Sample C Male 0.9
Sample D Male 1.2
Putamen
nTPM: 1.4
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.7
Sample A Female 1.7
Sample B Female 0.7
Sample C Male 1.8
Sample D Male 1.2
Septum
nTPM: 1.6
Samples: 4

Max nTPM: 2.1
Min nTPM: 0.9
Sample A Female 2.1
Sample B Female 1.3
Sample C Male 2.0
Sample D Male 0.9
Ventral pallidum
nTPM: 1.3
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 1.5
Sample C Male 1.5
Sample D Male 1.5

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 7.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 7.8
Samples: 4

Max nTPM: 9.1
Min nTPM: 6.8
Sample A Male 6.8
Sample B Male 7.6
Sample C Female 7.7
Sample D Female 9.1
Septum
nTPM: 4.8
Samples: 4

Max nTPM: 5.5
Min nTPM: 4.3
Sample A Male 4.7
Sample B Male 5.5
Sample C Female 4.5
Sample D Female 4.3
Ventral forebrain
nTPM: 6.6
Samples: 4

Max nTPM: 8.2
Min nTPM: 5.0
Sample A Male 7.1
Sample B Male 5.9
Sample C Female 8.2
Sample D Female 5.0

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.8
69352878 Antisense, RP_050412_01_C11, Mouse strain C57BL/6J (56 days, male) 1.8
Pallidum
Expression energy: 1.9
69352878 Antisense, RP_050412_01_C11, Mouse strain C57BL/6J (56 days, male) 1.9

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