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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:231.0 nTPM
HPA Brain:157.1 nTPM
GTEx:231.0 nTPM
FANTOM5:265.2 Scaled Tags Per Million
Pig:128.3 nTPM
Mouse:109.2 nTPM
Allen mouse:6.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.1
Sample id Sample description nTPM
Amygdala
nTPM: 157.1
2695 Female, age 67, right hemisphere 201.0
2814 Male, age 76, right hemisphere 199.7
2514 Male, age 75, right hemisphere 133.9
2517 Female, age 94, left hemisphere 126.2
1987 Female, age 91, left hemisphere 124.9
Basal amygdala
nTPM: 138.6
2609 Male, age 75, right hemisphere 170.9
1955 Male, age 76, both hemispheres 161.0
2243 Female, age 91, right hemisphere 144.4
2110 Male, age 80, left hemisphere 129.0
2685 Female, age 94, left hemisphere 115.9
2827 Female, age 67, right hemisphere 110.6
Central amygdala
nTPM: 150.5
1905 Male, age 76, both hemispheres 192.0
2826 Female, age 94, left hemisphere 157.3
2515 Male, age 75, right hemisphere 140.4
2239 Male, age 80, left hemisphere 131.5
2701 Female, age 91, right hemisphere 131.1
Corticomedial amygdala
nTPM: 121.8
2535 Female, age 67, right hemisphere 130.2
2240 Male, age 76, both hemispheres 129.6
2242 Female, age 91, right hemisphere 128.2
2829 Male, age 80, left hemisphere 125.2
2428 Male, age 75, right hemisphere 110.2
2429 Female, age 94, left hemisphere 107.1
Lateral amygdala
nTPM: 127.6
1883 Male, age 76, both hemispheres 165.3
2534 Female, age 94, left hemisphere 153.4
2516 Male, age 75, right hemisphere 145.6
2255 Female, age 91, right hemisphere 117.8
2256 Male, age 80, left hemisphere 98.8
2830 Female, age 67, right hemisphere 84.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

231.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 231.0
Samples: 152

Max nTPM: 590.5
Min nTPM: 44.6
Std nTPM: 81.0
Median nTPM: 217.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 590.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 568.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 510.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 437.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 432.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 406.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 388.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 378.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 377.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 340.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 335.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 335.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 330.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 328.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 328.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 327.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 326.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 322.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 314.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 308.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 307.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 298.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 294.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 292.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 288.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 288.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 286.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 281.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 280.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 277.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 277.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 276.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 276.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 275.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 275.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 270.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 269.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 268.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 267.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 265.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 262.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 261.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 260.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 260.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 259.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 259.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 259.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 254.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 249.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 249.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 249.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 248.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 246.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 243.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 243.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 242.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 242.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 239.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 239.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 238.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 237.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 236.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 233.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 232.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 229.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 228.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 228.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 227.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 225.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 224.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 223.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 221.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 221.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 221.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 218.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 217.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 217.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 217.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 216.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 215.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 215.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 214.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 212.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 211.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 211.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 211.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 209.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 209.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 209.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 207.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 204.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 204.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 204.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 203.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 202.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 202.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 201.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 200.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 200.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 197.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 196.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 189.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 186.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 185.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 184.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 183.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 182.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 182.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 182.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 181.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 180.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 178.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 178.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 178.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 175.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 175.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 172.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 170.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 170.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 167.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 166.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 166.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 165.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 165.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 163.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 162.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 162.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 157.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 155.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 154.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 154.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 151.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 151.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 149.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 145.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 145.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 145.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 144.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 144.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 143.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 141.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 141.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 140.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 138.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 131.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 130.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 127.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 125.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 125.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 116.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 108.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 44.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

265.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 265.2
FF:10151-102I7 76 years, female 265.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.3
Pig sample Sample description nTPM
Amygdala
nTPM: 128.4
Samples: 4

Max nTPM: 181.9
Min nTPM: 104.8
Sample A Female 181.9
Sample B Female 104.8
Sample C Male 113.2
Sample D Male 113.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 109.3
Samples: 4

Max nTPM: 153.0
Min nTPM: 91.2
Sample A Male 101.1
Sample B Male 91.7
Sample C Female 153.0
Sample D Female 91.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.0
75197594 Antisense, RP_060502_01_C04, Mouse strain C57BL/6J (56 days, male) 6.0

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