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CHCHD10
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:279.4 nTPM
FANTOM5:334.8 Scaled Tags Per Million
Pig:234.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003440
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

279.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 279.4
Samples: 246

Max nTPM: 544.4
Min nTPM: 117.6
Std nTPM: 77.9
Median nTPM: 270.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 544.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 514.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 500.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 497.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 483.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 483.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 481.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 479.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 458.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 434.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 428.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 428.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 418.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 417.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 411.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 409.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 406.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 405.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 404.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 398.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 398.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 397.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 391.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 387.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 380.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 378.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 376.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 374.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 370.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 370.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 364.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 361.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 357.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 357.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 356.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 356.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 354.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 354.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 353.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 351.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 349.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 349.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 348.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 347.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 345.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 345.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 344.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 343.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 343.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 343.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 342.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 341.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 339.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 331.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 330.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 329.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 329.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 329.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 324.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 323.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 322.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 322.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 321.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 318.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 317.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 315.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 314.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 314.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 314.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 313.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 311.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 311.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 310.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 308.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 306.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 306.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 306.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 305.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 305.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 304.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 301.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 301.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 301.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 300.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 297.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 296.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 295.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 295.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 294.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 294.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 293.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 293.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 292.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 292.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 291.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 291.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 289.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 289.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 288.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 288.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 288.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 288.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 287.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 287.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 286.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 285.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 285.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 285.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 284.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 283.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 283.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 282.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 282.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 281.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 279.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 279.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 277.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 274.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 274.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 273.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 273.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 272.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 270.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 269.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 267.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 266.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 266.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 264.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 263.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 262.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 262.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 261.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 259.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 259.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 259.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 259.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 258.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 258.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 258.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 258.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 257.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 257.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 255.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 254.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 253.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 251.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 250.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 250.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 250.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 250.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 249.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 249.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 247.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 246.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 246.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 245.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 245.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 245.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 244.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 244.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 243.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 242.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 241.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 240.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 240.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 239.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 239.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 239.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 237.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 237.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 235.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 234.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 234.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 234.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 233.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 233.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 232.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 231.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 231.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 230.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 229.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 228.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 228.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 226.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 225.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 224.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 224.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 223.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 222.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 222.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 221.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 220.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 219.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 219.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 218.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 217.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 217.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 216.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 216.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 215.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 214.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 213.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 211.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 211.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 211.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 211.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 209.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 208.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 208.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 207.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 205.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 204.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 203.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 202.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 201.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 201.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 200.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 198.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 197.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 195.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 188.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 187.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 185.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 178.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 178.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 176.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 173.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 172.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 172.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 169.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 168.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 167.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 167.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 165.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 164.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 161.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 161.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 153.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 152.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 150.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 148.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 141.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 137.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 132.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 127.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 117.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

334.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 334.8
FF:10164-103B2 76 years, female 334.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

234.7
Pig sample Sample description nTPM
Caudate
nTPM: 234.7
Samples: 4

Max nTPM: 287.3
Min nTPM: 180.2
Sample A Female 180.2
Sample B Female 268.0
Sample C Male 287.3
Sample D Male 203.3

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