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CHCHD10
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:154.6 nTPM
HPA:79.7 nTPM
GTEx:154.6 nTPM
FANTOM5:574.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003440
Endocrine cells High
Enterocytes High
Enterocytes - Microvilli Not detected
Goblet cells High
Paneth cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.7
overview
Male, age 65
Small intestine sample 232
nTPM: 96.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 76.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 69.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 75.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 154.6
Samples: 187

Max nTPM: 1253.2
Min nTPM: 45.7
Std nTPM: 97.2
Median nTPM: 144.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1253.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 288.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 288.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 278.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 274.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 270.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 270.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 258.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 255.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 253.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 251.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 250.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 243.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 242.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 240.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 238.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 237.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 237.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 230.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 229.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 226.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 222.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 221.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 221.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 219.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 218.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 216.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 211.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 210.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 209.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 209.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 207.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 205.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 205.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 202.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 200.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 199.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 195.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 194.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 192.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 190.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 188.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 187.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 186.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 185.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 184.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 183.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 183.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 182.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 180.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 179.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 178.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 178.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 178.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 177.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 177.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 177.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 177.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 175.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 171.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 170.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 170.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 168.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 167.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 167.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 165.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 163.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 163.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 162.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 160.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 159.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 159.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 158.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 157.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 156.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 156.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 155.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 155.1
GTEX-1192X-2526-SM-59868 50-59 years, male 154.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 154.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 152.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 151.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 151.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 148.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 148.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 147.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 147.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 147.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 146.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 146.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 145.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 145.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 144.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 144.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 142.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 141.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 141.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 141.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 141.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 140.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 138.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 136.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 133.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 133.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 132.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 131.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 131.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 130.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 129.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 127.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 127.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 126.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 125.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 125.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 124.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 124.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 124.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 122.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 122.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 122.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 121.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 121.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 120.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 119.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 116.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 116.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 116.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 116.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 114.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 114.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 114.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 113.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 112.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 112.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 111.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 110.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 109.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 109.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 108.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 108.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 108.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 107.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 107.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 107.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 106.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 105.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 104.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 103.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 101.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 99.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 99.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 97.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 97.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 97.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 97.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 95.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 94.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 94.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 93.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 91.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 90.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 90.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 88.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 88.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 87.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 87.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 86.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 85.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 82.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 81.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 79.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 79.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 78.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 77.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 75.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 75.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 74.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 72.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 70.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 70.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 65.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 57.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 56.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 52.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 52.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 47.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 45.7
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

574.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 574.8
FF:10024-101D6 15,40,85 years, mixed 574.8

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