MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.3 nTPM
HPA Brain:30.1 nTPM
GTEx:28.3 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.7
2666 Male, age 74, left hemisphere 40.4
1833 Male, age 53, unknown 26.4
1827 Male, age 72, unknown 21.9
2219 Male, age 76, both hemispheres 21.5
1870 Female, age 42, unknown 20.5
1830 Male, age 51, unknown 19.1
2411 Female, age 72, unknown 14.0
2586 Male, age 75, left hemisphere 13.3
2019 Male, age 18, unknown 12.9
2828 Female, age 72, unknown 6.6
Dorsal raphe nucleus
nTPM: 11.0
1828 Male, age 53, unknown 15.9
2016 Female, age 72, unknown 14.1
2750 Male, age 76, both hemispheres 10.8
2047 Male, age 72, unknown 8.6
2298 Female, age 72, unknown 5.5
Inferior colliculus
nTPM: 17.7
2849 Male, age 72, unknown 20.8
1848 Female, age 42, unknown 18.5
1890 Male, age 53, unknown 15.9
2097 Female, age 72, unknown 15.7
Median raphe nucleus
nTPM: 12.3
2220 Male, age 76, midline 12.3
Periaquaductal grey, anterior
nTPM: 13.1
2502 Female, age 75, unknown 17.9
1947 Male, age 18, unknown 13.3
1795 Male, age 51, unknown 8.0
Periaquaductal grey, dorsal
nTPM: 17.4
1831 Male, age 72, unknown 21.1
2464 Female, age 72, unknown 18.1
1840 Male, age 53, unknown 15.9
2850 Male, age 76, both hemispheres 14.6
Periaquaductal grey, lateral
nTPM: 8.4
2053 Male, age 18, unknown 14.6
2140 Male, age 76, both hemispheres 6.0
2272 Male, age 74, both hemispheres 4.7
Pretectal area
nTPM: 16.3
1944 Female, age 72, unknown 29.6
1815 Male, age 53, unknown 26.6
1817 Female, age 42, unknown 24.7
1816 Male, age 51, unknown 21.5
2007 Male, age 72, unknown 17.2
2825 Male, age 18, unknown 15.5
2667 Female, age 75, unknown 11.0
2407 Male, age 75, both hemispheres 10.3
2224 Female, age 72, unknown 10.2
2316 Male, age 76, right hemisphere 7.8
2273 Male, age 74, both hemispheres 5.0
Red nucleus
nTPM: 21.8
1821 Female, age 72, unknown 35.8
1865 Male, age 51, unknown 31.0
2725 Female, age 75, unknown 28.2
1954 Female, age 42, unknown 26.0
2503 Female, age 72, unknown 23.9
2588 Male, age 74, left hemisphere 23.2
1904 Male, age 53, unknown 21.5
2823 Male, age 76, right hemisphere 19.4
2584 Male, age 75, left hemisphere 19.0
2785 Male, age 18, unknown 12.1
2227 Male, age 72, unknown 10.5
2769 Male, age 72, unknown 10.5
Substantia nigra
nTPM: 30.1
2241 Male, age 72, unknown 58.1
2409 Female, age 72, unknown 55.9
2665 Male, age 74, both hemispheres 35.4
2699 Male, age 18, unknown 32.9
1889 Female, age 72, unknown 32.0
1851 Male, age 51, unknown 23.5
1916 Female, age 42, unknown 19.6
1941 Male, age 53, unknown 15.5
2590 Female, age 75, unknown 14.8
2583 Male, age 75, right hemisphere 13.0
Superior colliculus
nTPM: 18.5
1895 Male, age 76, right hemisphere 24.7
2087 Female, age 72, unknown 24.0
2587 Male, age 74, left hemisphere 22.2
2668 Female, age 75, unknown 21.3
1839 Male, age 51, unknown 17.9
1995 Male, age 72, unknown 16.8
1913 Female, age 42, unknown 16.6
2261 Male, age 18, unknown 15.4
2664 Male, age 75, both hemispheres 14.4
1796 Male, age 53, unknown 12.0
Ventral tegmental area
nTPM: 15.4
2410 Female, age 72, unknown 22.7
1915 Female, age 42, unknown 16.9
2223 Female, age 72, unknown 16.5
2218 Male, age 76, both hemispheres 15.3
1942 Male, age 51, unknown 10.6
2021 Male, age 53, unknown 10.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 28.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.3
Samples: 139

Max nTPM: 69.6
Min nTPM: 6.5
Std nTPM: 10.3
Median nTPM: 28.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 69.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 67.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 53.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 53.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 53.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 48.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 47.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 46.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 42.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 42.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 41.0
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