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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1067.8 nTPM
HPA:1063.2 nTPM
GTEx:1067.8 nTPM
FANTOM5:21.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA040688Antibody HPA055316
Glandular cells HighMedium




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1063.2
overview
Male, age 65
Small intestine sample 232
nTPM: 1502.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 920.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 941.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 888.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1067.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1067.8
Samples: 187

Max nTPM: 1815.8
Min nTPM: 604.8
Std nTPM: 244.9
Median nTPM: 1016.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1815.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1780.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1773.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1772.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1768.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 1747.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1592.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1585.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1561.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1505.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1485.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1476.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1475.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1437.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1425.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1422.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1421.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1418.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1406.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1397.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1395.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1391.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1382.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1367.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1367.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1358.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1346.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1321.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1321.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1314.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1312.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1304.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1303.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1301.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1301.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1296.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1295.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1285.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1268.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1258.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1248.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1241.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1232.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1228.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1226.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1215.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1213.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1206.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1205.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 1198.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1196.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1173.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1169.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1165.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1160.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1142.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1142.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1139.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1135.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1133.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1129.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1117.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1117.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1115.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1114.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1113.6
GTEX-1192X-2526-SM-59868 50-59 years, male 1109.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1108.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1107.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1104.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1104.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1103.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1101.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1098.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1091.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1087.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1085.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1084.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1084.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1081.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1079.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1076.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1066.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1057.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1057.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1050.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1046.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1045.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1033.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1031.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1023.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1017.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1016.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1016.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1014.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1004.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1000.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 999.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 998.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 997.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 997.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 996.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 991.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 990.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 986.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 986.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 986.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 979.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 978.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 976.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 973.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 972.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 954.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 953.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 950.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 949.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 948.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 942.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 939.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 939.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 937.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 933.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 928.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 924.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 921.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 919.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 919.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 915.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 915.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 912.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 910.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 909.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 909.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 908.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 902.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 897.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 896.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 896.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 895.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 895.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 892.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 878.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 877.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 874.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 873.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 872.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 867.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 866.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 866.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 866.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 854.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 854.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 853.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 853.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 847.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 844.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 838.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 837.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 834.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 819.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 818.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 815.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 814.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 814.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 809.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 808.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 807.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 797.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 796.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 793.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 793.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 779.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 775.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 775.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 767.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 762.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 760.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 759.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 752.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 739.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 732.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 730.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 721.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 715.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 704.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 683.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 604.8
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

21.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 21.3
FF:10024-101D6 15,40,85 years, mixed 21.3

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