MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:127.6 nTPM
HPA Brain:78.0 nTPM
GTEx:127.6 nTPM
FANTOM5:127.3 Scaled Tags Per Million
Pig:112.8 nTPM
Mouse:196.1 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 78.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.0
2586 Male, age 75, left hemisphere 86.5
2666 Male, age 74, left hemisphere 76.2
1870 Female, age 42, unknown 73.2
1827 Male, age 72, unknown 68.8
1833 Male, age 53, unknown 64.1
2019 Male, age 18, unknown 62.7
2411 Female, age 72, unknown 61.9
1830 Male, age 51, unknown 61.8
2828 Female, age 72, unknown 60.1
2219 Male, age 76, both hemispheres 55.3
Dorsal raphe nucleus
nTPM: 74.2
2298 Female, age 72, unknown 84.7
1828 Male, age 53, unknown 78.5
2047 Male, age 72, unknown 73.1
2750 Male, age 76, both hemispheres 68.4
2016 Female, age 72, unknown 66.1
Inferior colliculus
nTPM: 68.8
2097 Female, age 72, unknown 73.8
1848 Female, age 42, unknown 70.9
2849 Male, age 72, unknown 65.6
1890 Male, age 53, unknown 65.0
Median raphe nucleus
nTPM: 70.8
2220 Male, age 76, midline 70.8
Periaquaductal grey, anterior
nTPM: 78.0
1947 Male, age 18, unknown 82.2
2502 Female, age 75, unknown 78.8
1795 Male, age 51, unknown 73.0
Periaquaductal grey, dorsal
nTPM: 66.8
1840 Male, age 53, unknown 76.9
1831 Male, age 72, unknown 65.2
2850 Male, age 76, both hemispheres 64.1
2464 Female, age 72, unknown 60.9
Periaquaductal grey, lateral
nTPM: 63.4
2053 Male, age 18, unknown 64.6
2140 Male, age 76, both hemispheres 64.1
2272 Male, age 74, both hemispheres 61.5
Pretectal area
nTPM: 72.1
1944 Female, age 72, unknown 82.4
1816 Male, age 51, unknown 80.5
1817 Female, age 42, unknown 80.5
2007 Male, age 72, unknown 77.0
2224 Female, age 72, unknown 73.9
2825 Male, age 18, unknown 72.8
1815 Male, age 53, unknown 71.1
2273 Male, age 74, both hemispheres 67.8
2667 Female, age 75, unknown 67.5
2407 Male, age 75, both hemispheres 63.7
2316 Male, age 76, right hemisphere 56.3
Red nucleus
nTPM: 65.6
1821 Female, age 72, unknown 78.3
2584 Male, age 75, left hemisphere 69.9
2725 Female, age 75, unknown 68.2
2588 Male, age 74, left hemisphere 67.6
2785 Male, age 18, unknown 65.8
2227 Male, age 72, unknown 65.4
2503 Female, age 72, unknown 64.9
1865 Male, age 51, unknown 64.2
2769 Male, age 72, unknown 64.0
1954 Female, age 42, unknown 63.7
1904 Male, age 53, unknown 59.6
2823 Male, age 76, right hemisphere 56.0
Substantia nigra
nTPM: 76.8
1916 Female, age 42, unknown 89.4
2241 Male, age 72, unknown 85.6
2665 Male, age 74, both hemispheres 81.9
1851 Male, age 51, unknown 81.0
1941 Male, age 53, unknown 79.4
2590 Female, age 75, unknown 72.6
1889 Female, age 72, unknown 71.8
2699 Male, age 18, unknown 69.6
2583 Male, age 75, right hemisphere 68.3
2409 Female, age 72, unknown 68.1
Superior colliculus
nTPM: 70.5
2664 Male, age 75, both hemispheres 78.5
2087 Female, age 72, unknown 75.1
2261 Male, age 18, unknown 74.7
2668 Female, age 75, unknown 74.5
2587 Male, age 74, left hemisphere 74.3
1796 Male, age 53, unknown 70.9
1839 Male, age 51, unknown 70.0
1895 Male, age 76, right hemisphere 63.1
1995 Male, age 72, unknown 62.3
1913 Female, age 42, unknown 61.7
Ventral tegmental area
nTPM: 73.1
1915 Female, age 42, unknown 80.6
2223 Female, age 72, unknown 76.0
2410 Female, age 72, unknown 75.9
1942 Male, age 51, unknown 72.0
2021 Male, age 53, unknown 68.8
2218 Male, age 76, both hemispheres 64.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 127.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 127.6
Samples: 139

Max nTPM: 235.3
Min nTPM: 79.5
Std nTPM: 22.9
Median nTPM: 125.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 235.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 200.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 198.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 177.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 166.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 164.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 163.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 163.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 162.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 160.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 159.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 127.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 127.3
FF:10158-103A5 76 years, female 127.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 112.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 112.8
Samples: 4

Max nTPM: 148.6
Min nTPM: 87.6
Sample A Female 148.6
Sample B Female 108.6
Sample C Male 106.3
Sample D Male 87.6
Midbrain
nTPM: 109.4
Samples: 4

Max nTPM: 145.5
Min nTPM: 84.1
Sample A Female 145.5
Sample B Female 110.1
Sample C Male 97.8
Sample D Male 84.1
Periaqueductal gray
nTPM: 88.5
Samples: 3

Max nTPM: 94.0
Min nTPM: 79.7
Sample B Female 91.9
Sample C Male 94.0
Sample D Male 79.7
Superior colliculi
nTPM: 103.0
Samples: 4

Max nTPM: 120.8
Min nTPM: 91.3
Sample A Female 120.8
Sample B Female 98.1
Sample C Male 101.8
Sample D Male 91.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 196.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 196.1
Samples: 4

Max nTPM: 203.3
Min nTPM: 188.0
Sample A Male 203.3
Sample B Male 188.0
Sample C Female 191.6
Sample D Female 201.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
69445415 Antisense, RP_050419_01_B02, Mouse strain C57BL/6J (56 days, male) 7.7
74988744 Antisense, RP_060315_04_B12, Mouse strain C57BL/6J (56 days, male) 3.4

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