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PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

HMBS
Synonyms PBGD, PORC, UPS
Gene descriptioni

Full gene name according to HGNC.

Hydroxymethylbilane synthase
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Enzymes
Human disease related genes
Metabolic proteins
Plasma proteins
Potential drug targets
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 11
Cytoband q23.3
Chromosome location (bp) 119084866 - 119093834
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

13
Ensembl ENSG00000256269 (version 109)
Entrez gene 3145
HGNC HGNC:4982
UniProt P08397 (UniProt - Evidence at protein level)
neXtProt NX_P08397
GeneCards HMBS
Antibodypedia HMBS antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

As part of the heme biosynthetic pathway, catalyzes the sequential polymerization of four molecules of porphobilinogen to form hydroxymethylbilane, also known as preuroporphyrinogen 1, 2, 3, 4. Catalysis begins with the assembly of the dipyrromethane cofactor by the apoenzyme from two molecules of porphobilinogen or from preuroporphyrinogen. The covalently linked cofactor acts as a primer, around which the tetrapyrrole product is assembled. In the last step of catalysis, the product, preuroporphyrinogen, is released, leaving the cofactor bound to the holodeaminase intact 5.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Transferase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Heme biosynthesis, Porphyrin biosynthesis
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the hydroxymethylbilane synthase superfamily. The encoded protein is the third enzyme of the heme biosynthetic pathway and catalyzes the head to tail condensation of four porphobilinogen molecules into the linear hydroxymethylbilane. Mutations in this gene are associated with the autosomal dominant disease acute intermittent porphyria. Alternatively spliced transcript variants encoding different isoforms have been described. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
HMBS-201
ENSP00000376584
ENST00000392841
P08397
[Direct mapping] Porphobilinogen deaminase
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of cofactor/vitamin metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004418 [hydroxymethylbilane synthase activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006779 [porphyrin-containing compound biosynthetic process]
GO:0006782 [protoporphyrinogen IX biosynthetic process]
GO:0006783 [heme biosynthetic process]
GO:0016740 [transferase activity]
GO:0018160 [peptidyl-pyrromethane cofactor linkage]
GO:0033014 [tetrapyrrole biosynthetic process]
Show all
344 aa
37.7 kDa
No 0
HMBS-202
ENSP00000392041
ENST00000442944
A0A3F2YNY7
[Direct mapping] Hydroxymethylbilane synthase
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of cofactor/vitamin metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004418 [hydroxymethylbilane synthase activity]
GO:0006779 [porphyrin-containing compound biosynthetic process]
GO:0006782 [protoporphyrinogen IX biosynthetic process]
GO:0016740 [transferase activity]
GO:0018160 [peptidyl-pyrromethane cofactor linkage]
GO:0033014 [tetrapyrrole biosynthetic process]
Show all
355 aa
38.8 kDa
No 0
HMBS-204
ENSP00000442079
ENST00000535253
F5GY90
[Direct mapping] Hydroxymethylbilane synthase
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of cofactor/vitamin metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004418 [hydroxymethylbilane synthase activity]
GO:0006779 [porphyrin-containing compound biosynthetic process]
GO:0016740 [transferase activity]
GO:0033014 [tetrapyrrole biosynthetic process]
Show all
187 aa
20.9 kDa
No 0
HMBS-207
ENSP00000438726
ENST00000536813
F5H0P4
[Direct mapping] Hydroxymethylbilane synthase
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of cofactor/vitamin metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004418 [hydroxymethylbilane synthase activity]
GO:0006779 [porphyrin-containing compound biosynthetic process]
GO:0016740 [transferase activity]
GO:0033014 [tetrapyrrole biosynthetic process]
Show all
228 aa
25.3 kDa
No 0
HMBS-208
ENSP00000444730
ENST00000537841
P08397
[Direct mapping] Porphobilinogen deaminase
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of cofactor/vitamin metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004418 [hydroxymethylbilane synthase activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006779 [porphyrin-containing compound biosynthetic process]
GO:0006782 [protoporphyrinogen IX biosynthetic process]
GO:0006783 [heme biosynthetic process]
GO:0016740 [transferase activity]
GO:0018160 [peptidyl-pyrromethane cofactor linkage]
GO:0033014 [tetrapyrrole biosynthetic process]
Show all
344 aa
37.7 kDa
No 0
HMBS-212
ENSP00000443058
ENST00000542729
P08397
[Direct mapping] Porphobilinogen deaminase
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of cofactor/vitamin metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004418 [hydroxymethylbilane synthase activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006779 [porphyrin-containing compound biosynthetic process]
GO:0006782 [protoporphyrinogen IX biosynthetic process]
GO:0006783 [heme biosynthetic process]
GO:0016740 [transferase activity]
GO:0018160 [peptidyl-pyrromethane cofactor linkage]
GO:0033014 [tetrapyrrole biosynthetic process]
Show all
304 aa
33.3 kDa
No 0
HMBS-214
ENSP00000445429
ENST00000543090
F5H345
[Direct mapping] Hydroxymethylbilane synthase
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of cofactor/vitamin metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004418 [hydroxymethylbilane synthase activity]
GO:0006779 [porphyrin-containing compound biosynthetic process]
GO:0006782 [protoporphyrinogen IX biosynthetic process]
GO:0016740 [transferase activity]
GO:0018160 [peptidyl-pyrromethane cofactor linkage]
GO:0033014 [tetrapyrrole biosynthetic process]
Show all
330 aa
35.8 kDa
No 0
HMBS-219
ENSP00000438424
ENST00000544387
P08397
[Direct mapping] Porphobilinogen deaminase
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of cofactor/vitamin metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004418 [hydroxymethylbilane synthase activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006779 [porphyrin-containing compound biosynthetic process]
GO:0006782 [protoporphyrinogen IX biosynthetic process]
GO:0006783 [heme biosynthetic process]
GO:0016740 [transferase activity]
GO:0018160 [peptidyl-pyrromethane cofactor linkage]
GO:0033014 [tetrapyrrole biosynthetic process]
Show all
321 aa
34.9 kDa
No 0
HMBS-223
ENSP00000445599
ENST00000546302
F5H226
[Direct mapping] Hydroxymethylbilane synthase
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of cofactor/vitamin metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004418 [hydroxymethylbilane synthase activity]
GO:0006779 [porphyrin-containing compound biosynthetic process]
GO:0016740 [transferase activity]
GO:0033014 [tetrapyrrole biosynthetic process]
Show all
191 aa
21.3 kDa
No 0
HMBS-226
ENSP00000497255
ENST00000648374
P08397
[Direct mapping] Porphobilinogen deaminase
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of cofactor/vitamin metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004418 [hydroxymethylbilane synthase activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006779 [porphyrin-containing compound biosynthetic process]
GO:0006782 [protoporphyrinogen IX biosynthetic process]
GO:0006783 [heme biosynthetic process]
GO:0016740 [transferase activity]
GO:0018160 [peptidyl-pyrromethane cofactor linkage]
GO:0033014 [tetrapyrrole biosynthetic process]
Show all
344 aa
37.7 kDa
No 0
HMBS-230
ENSP00000496970
ENST00000650101
A0A3B3IRR1
[Direct mapping] Hydroxymethylbilane synthase
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of cofactor/vitamin metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004418 [hydroxymethylbilane synthase activity]
GO:0006779 [porphyrin-containing compound biosynthetic process]
GO:0006782 [protoporphyrinogen IX biosynthetic process]
GO:0016740 [transferase activity]
GO:0018160 [peptidyl-pyrromethane cofactor linkage]
GO:0033014 [tetrapyrrole biosynthetic process]
Show all
338 aa
37.2 kDa
No 0
HMBS-232
ENSP00000498786
ENST00000652429
P08397
[Direct mapping] Porphobilinogen deaminase
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of cofactor/vitamin metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004418 [hydroxymethylbilane synthase activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006779 [porphyrin-containing compound biosynthetic process]
GO:0006782 [protoporphyrinogen IX biosynthetic process]
GO:0006783 [heme biosynthetic process]
GO:0016740 [transferase activity]
GO:0018160 [peptidyl-pyrromethane cofactor linkage]
GO:0033014 [tetrapyrrole biosynthetic process]
Show all
361 aa
39.3 kDa
No 0
HMBS-233
ENSP00000509288
ENST00000686218
A0A8I5KXV4
[Direct mapping] Hydroxymethylbilane synthase
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of cofactor/vitamin metabolism
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004418 [hydroxymethylbilane synthase activity]
GO:0006779 [porphyrin-containing compound biosynthetic process]
GO:0006782 [protoporphyrinogen IX biosynthetic process]
GO:0016740 [transferase activity]
GO:0018160 [peptidyl-pyrromethane cofactor linkage]
GO:0033014 [tetrapyrrole biosynthetic process]
Show all
306 aa
33.5 kDa
No 0

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