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LSM14A
HPA
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  • LSM14A
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

LSM14A
Synonyms C19orf13, DKFZP434D1335, FAM61A, RAP55, RAP55A
Gene descriptioni

Full gene name according to HGNC.

LSM14A mRNA processing body assembly factor
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 19
Cytoband q13.11
Chromosome location (bp) 34172504 - 34229288
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000257103 (version 109)
Entrez gene 26065
HGNC HGNC:24489
UniProt Q8ND56 (UniProt - Evidence at protein level)
neXtProt NX_Q8ND56
GeneCards LSM14A
Antibodypedia LSM14A antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Essential for formation of P-bodies, cytoplasmic structures that provide storage sites for translationally inactive mRNAs and protect them from degradation 1, 2, 3. Acts as a repressor of mRNA translation 4. May play a role in mitotic spindle assembly 5.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Developmental protein, Repressor, Ribonucleoprotein
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Translation regulation
Gene summary (Entrez)i

Useful information about the gene from Entrez

Sm-like proteins were identified in a variety of organisms based on sequence homology with the Sm protein family (see SNRPD2; 601061). Sm-like proteins contain the Sm sequence motif, which consists of 2 regions separated by a linker of variable length that folds as a loop. The Sm-like proteins are thought to form a stable heteromer present in tri-snRNP particles, which are important for pre-mRNA splicing.[supplied by OMIM, Mar 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
LSM14A-201
ENSP00000413964
ENST00000433627
Q8ND56
[Direct mapping] Protein LSM14 homolog A
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000932 [P-body]
GO:0003723 [RNA binding]
GO:0003729 [mRNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005819 [spindle]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0006417 [regulation of translation]
GO:0010494 [cytoplasmic stress granule]
GO:0017148 [negative regulation of translation]
GO:0033962 [P-body assembly]
GO:0034063 [stress granule assembly]
GO:0036464 [cytoplasmic ribonucleoprotein granule]
GO:0072686 [mitotic spindle]
GO:0090307 [mitotic spindle assembly]
GO:1990124 [messenger ribonucleoprotein complex]
GO:1990904 [ribonucleoprotein complex]
Show all
463 aa
50.5 kDa
No 0
LSM14A-202
ENSP00000446451
ENST00000540746
Q8ND56
[Direct mapping] Protein LSM14 homolog A
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000932 [P-body]
GO:0003723 [RNA binding]
GO:0003729 [mRNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005819 [spindle]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0006417 [regulation of translation]
GO:0010494 [cytoplasmic stress granule]
GO:0017148 [negative regulation of translation]
GO:0033962 [P-body assembly]
GO:0034063 [stress granule assembly]
GO:0036464 [cytoplasmic ribonucleoprotein granule]
GO:0072686 [mitotic spindle]
GO:0090307 [mitotic spindle assembly]
GO:1990124 [messenger ribonucleoprotein complex]
GO:1990904 [ribonucleoprotein complex]
Show all
422 aa
46.4 kDa
No 0
LSM14A-203
ENSP00000446271
ENST00000544216
Q8ND56
[Direct mapping] Protein LSM14 homolog A
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000932 [P-body]
GO:0003690 [double-stranded DNA binding]
GO:0003723 [RNA binding]
GO:0003725 [double-stranded RNA binding]
GO:0003727 [single-stranded RNA binding]
GO:0003729 [mRNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005819 [spindle]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0006417 [regulation of translation]
GO:0010494 [cytoplasmic stress granule]
GO:0017148 [negative regulation of translation]
GO:0033962 [P-body assembly]
GO:0034063 [stress granule assembly]
GO:0036464 [cytoplasmic ribonucleoprotein granule]
GO:0039529 [RIG-I signaling pathway]
GO:0051607 [defense response to virus]
GO:0060340 [positive regulation of type I interferon-mediated signaling pathway]
GO:0072686 [mitotic spindle]
GO:0090307 [mitotic spindle assembly]
GO:1990124 [messenger ribonucleoprotein complex]
GO:1990904 [ribonucleoprotein complex]
Show all
463 aa
50.6 kDa
No 0
LSM14A-205
ENSP00000466725
ENST00000586157
K7EMZ9
[Direct mapping] Protein LSM14 homolog A
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
314 aa
34.5 kDa
No 0

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