MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.9 nTPM
HPA Brain:58.0 nTPM
GTEx:13.9 nTPM
FANTOM5:6.5 Scaled Tags Per Million
Mouse:36.5 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 58.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.8
2586 Male, age 75, left hemisphere 72.7
2666 Male, age 74, left hemisphere 66.9
1870 Female, age 42, unknown 45.7
1833 Male, age 53, unknown 42.4
2411 Female, age 72, unknown 40.0
1830 Male, age 51, unknown 39.5
2219 Male, age 76, both hemispheres 36.2
1827 Male, age 72, unknown 35.1
2019 Male, age 18, unknown 30.7
2828 Female, age 72, unknown 28.7
Dorsal raphe nucleus
nTPM: 42.9
2047 Male, age 72, unknown 52.6
1828 Male, age 53, unknown 47.1
2298 Female, age 72, unknown 41.0
2750 Male, age 76, both hemispheres 36.9
2016 Female, age 72, unknown 36.7
Inferior colliculus
nTPM: 50.4
2849 Male, age 72, unknown 64.4
1848 Female, age 42, unknown 56.3
1890 Male, age 53, unknown 45.3
2097 Female, age 72, unknown 35.6
Median raphe nucleus
nTPM: 39.0
2220 Male, age 76, midline 39.0
Periaquaductal grey, anterior
nTPM: 58.0
1947 Male, age 18, unknown 77.4
1795 Male, age 51, unknown 48.7
2502 Female, age 75, unknown 47.9
Periaquaductal grey, dorsal
nTPM: 43.6
2850 Male, age 76, both hemispheres 48.1
1840 Male, age 53, unknown 45.5
1831 Male, age 72, unknown 41.0
2464 Female, age 72, unknown 39.8
Periaquaductal grey, lateral
nTPM: 39.3
2140 Male, age 76, both hemispheres 43.0
2272 Male, age 74, both hemispheres 37.6
2053 Male, age 18, unknown 37.2
Pretectal area
nTPM: 39.9
2825 Male, age 18, unknown 57.7
1816 Male, age 51, unknown 48.6
1944 Female, age 72, unknown 44.8
2224 Female, age 72, unknown 44.0
2316 Male, age 76, right hemisphere 42.3
2007 Male, age 72, unknown 39.1
2407 Male, age 75, both hemispheres 37.9
2667 Female, age 75, unknown 33.6
1815 Male, age 53, unknown 32.9
2273 Male, age 74, both hemispheres 30.0
1817 Female, age 42, unknown 27.6
Red nucleus
nTPM: 37.1
2584 Male, age 75, left hemisphere 47.1
2588 Male, age 74, left hemisphere 46.9
2769 Male, age 72, unknown 44.9
2227 Male, age 72, unknown 43.5
2725 Female, age 75, unknown 40.8
2503 Female, age 72, unknown 39.7
1954 Female, age 42, unknown 34.8
1821 Female, age 72, unknown 32.9
2823 Male, age 76, right hemisphere 32.3
1904 Male, age 53, unknown 29.9
1865 Male, age 51, unknown 26.2
2785 Male, age 18, unknown 25.9
Substantia nigra
nTPM: 38.2
1941 Male, age 53, unknown 50.8
1916 Female, age 42, unknown 47.0
2665 Male, age 74, both hemispheres 41.3
1889 Female, age 72, unknown 40.2
2590 Female, age 75, unknown 37.5
2583 Male, age 75, right hemisphere 37.4
2699 Male, age 18, unknown 36.1
1851 Male, age 51, unknown 35.1
2241 Male, age 72, unknown 34.3
2409 Female, age 72, unknown 22.1
Superior colliculus
nTPM: 40.2
1839 Male, age 51, unknown 53.4
2664 Male, age 75, both hemispheres 53.1
2668 Female, age 75, unknown 47.5
1796 Male, age 53, unknown 41.4
2587 Male, age 74, left hemisphere 40.3
2261 Male, age 18, unknown 40.0
2087 Female, age 72, unknown 38.5
1895 Male, age 76, right hemisphere 37.7
1913 Female, age 42, unknown 27.8
1995 Male, age 72, unknown 22.2
Ventral tegmental area
nTPM: 37.5
1915 Female, age 42, unknown 43.8
1942 Male, age 51, unknown 39.9
2218 Male, age 76, both hemispheres 37.8
2223 Female, age 72, unknown 35.3
2021 Male, age 53, unknown 34.6
2410 Female, age 72, unknown 33.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.9
Samples: 139

Max nTPM: 32.1
Min nTPM: 4.5
Std nTPM: 4.8
Median nTPM: 13.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 32.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 29.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 28.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 25.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 25.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 25.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 24.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 23.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 23.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 22.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 21.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.5
FF:10158-103A5 76 years, female 6.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 36.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.5
Samples: 4

Max nTPM: 38.1
Min nTPM: 34.7
Sample A Male 38.1
Sample B Male 37.2
Sample C Female 34.7
Sample D Female 35.8

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