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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:27.1 nTPM
FANTOM5:11.3 Scaled Tags Per Million
Pig:13.8 nTPM

MEDULLA OBLONGATA - Annotated protein expression
Pending normal tissue analysis

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.1
Sample id Sample description nTPM
Area postrema
nTPM: 25.7
2799 Male, age 61, both hemispheres 34.3
2306 Male, age 80, both hemispheres 22.1
2054 Male, age 76, both hemispheres 20.8
Dorsal medullary reticular nucleus
nTPM: 15.6
2088 Male, age 76, both hemispheres 17.4
2373 Male, age 61, both hemispheres 15.4
2040 Female, age 85, both hemispheres 14.0
Dorsal motor vagal complex
nTPM: 19.9
2643 Male, age 74, both hemispheres 28.2
2185 Male, age 76, both hemispheres 24.7
2813 Female, age 72, unknown 21.0
2844 Male, age 55, unknown 19.7
2133 Female, age 91, both hemispheres 18.4
2807 Female, age 85, both hemispheres 17.7
2797 Male, age 61, both hemispheres 15.0
2000 Male, age 74, unknown 14.2
Gigantocellular reticular nuclei, medullary
nTPM: 15.8
2022 Male, age 76, right hemisphere 19.0
2462 Male, age 74, both hemispheres 18.0
2314 Male, age 61, both hemispheres 16.4
2310 Male, age 80, both hemispheres 15.2
2387 Female, age 91, both hemispheres 13.5
1876 Female, age 85, both hemispheres 12.7
Gigantocellular reticular nuclei, pars
nTPM: 14.1
2084 Female, age 85, both hemispheres 15.0
2336 Male, age 61, both hemispheres 14.3
2330 Male, age 80, both hemispheres 14.1
2168 Male, age 76, both hemispheres 13.6
2706 Male, age 80, both hemispheres 13.6
Inferior olive
nTPM: 18.7
2379 Male, age 80, both hemispheres 21.4
2085 Female, age 85, both hemispheres 19.4
2563 Male, age 74, both hemispheres 19.2
2178 Male, age 61, both hemispheres 17.8
2628 Female, age 91, both hemispheres 16.0
Lateral medullary reticular nucleus
nTPM: 18.4
2852 Male, age 80, both hemispheres 21.3
2305 Male, age 74, both hemispheres 20.8
2044 Male, age 76, both hemispheres 18.2
2190 Female, age 85, both hemispheres 17.4
2374 Male, age 61, both hemispheres 16.7
2804 Female, age 91, both hemispheres 16.2
Medial olivary nucleus
nTPM: 20.4
1962 Male, age 76, both hemispheres 29.0
1943 Male, age 61, both hemispheres 21.7
2851 Male, age 80, both hemispheres 16.7
2138 Female, age 91, both hemispheres 14.2
Medial vestibular nucleus
nTPM: 14.9
2134 Male, age 76, both hemispheres 17.9
2743 Female, age 85, both hemispheres 16.0
2624 Male, age 61, both hemispheres 15.5
2801 Male, age 74, both hemispheres 14.9
2093 Male, age 80, both hemispheres 14.2
2803 Female, age 91, both hemispheres 10.9
Motor hypoglossal nucleus
nTPM: 18.3
2277 Male, age 76, both hemispheres 26.4
2182 Male, age 80, both hemispheres 22.2
2132 Female, age 85, both hemispheres 16.2
2125 Female, age 91, both hemispheres 13.8
2461 Male, age 61, both hemispheres 13.2
Nucleus ambiguus
nTPM: 26.5
2071 Male, age 76, both hemispheres 33.7
2096 Female, age 85, both hemispheres 19.3
Nucleus cuneatus
nTPM: 17.8
2564 Male, age 74, both hemispheres 22.1
2100 Male, age 76, both hemispheres 19.9
2131 Male, age 76, both hemispheres 19.3
2380 Male, age 80, both hemispheres 18.6
2805 Female, age 91, both hemispheres 16.9
2808 Female, age 85, both hemispheres 16.5
2562 Male, age 61, both hemispheres 16.4
2376 Male, age 61, both hemispheres 15.4
2381 Male, age 80, both hemispheres 15.4
Nucleus gracilis
nTPM: 19.4
2627 Male, age 74, both hemispheres 20.3
2382 Male, age 80, both hemispheres 19.0
2299 Female, age 85, both hemispheres 18.9
Nucleus raphe obscurus
nTPM: 20.5
2142 Male, age 76, midline 32.8
2800 Male, age 61, midline 15.6
2845 Female, age 85, midline 13.0
Nucleus raphe pallidus
nTPM: 27.1
1924 Male, age 61, midline 37.7
2145 Male, age 76, midline 26.6
2183 Male, age 80, midline 17.0
Nucleus tractus solitarii
nTPM: 19.9
2307 Male, age 80, both hemispheres 27.6
2656 Male, age 76, both hemispheres 20.4
2191 Female, age 85, both hemispheres 16.9
2144 Female, age 91, right hemisphere 14.8
Parvicellular reticular nuclei
nTPM: 15.7
2095 Male, age 76, both hemispheres 16.5
2119 Male, age 80, both hemispheres 15.8
2558 Male, age 74, both hemispheres 14.8
Parvicellular reticular nuclei, medullary
nTPM: 15.8
2181 Male, age 80, left hemisphere 17.4
2091 Female, age 85, both hemispheres 16.2
2189 Female, age 91, both hemispheres 13.9
Peritrigeminal nucleus
nTPM: 20.8
2136 Male, age 76, both hemispheres 25.5
2179 Male, age 61, both hemispheres 18.7
2067 Female, age 85, both hemispheres 18.3
Prepositus hypoglossal nucleus
nTPM: 17.9
2086 Male, age 80, both hemispheres 21.4
2855 Female, age 85, right hemisphere 14.3
Spinal trigeminal nucleus, caudal
nTPM: 19.1
2642 Male, age 74, both hemispheres 22.1
2447 Male, age 76, both hemispheres 21.4
2312 Male, age 61, both hemispheres 18.8
2308 Male, age 80, both hemispheres 18.5
2390 Female, age 91, both hemispheres 15.0
Spinal trigeminal nucleus, interpolar
nTPM: 15.6
2033 Male, age 80, both hemispheres 20.2
2066 Male, age 76, right hemisphere 15.3
2386 Female, age 85, both hemispheres 15.0
2389 Female, age 91, both hemispheres 14.0
2625 Male, age 61, both hemispheres 13.7
Spinal vestibular nucleus
nTPM: 16.7
2780 Male, age 80, both hemispheres 22.9
2384 Male, age 74, both hemispheres 20.1
2748 Male, age 76, both hemispheres 16.4
2796 Male, age 61, both hemispheres 14.9
2186 Female, age 91, both hemispheres 14.2
2806 Female, age 85, both hemispheres 11.9
Superior vestibular nucleus
nTPM: 20.8
2061 Male, age 76, both hemispheres 25.1
2015 Male, age 80, both hemispheres 19.8
2383 Male, age 74, both hemispheres 17.6
Ventral medullary reticular nucleus
nTPM: 15.7
2060 Male, age 76, both hemispheres 16.5
2372 Male, age 61, both hemispheres 14.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 18.6
1986 Male, age 76, both hemispheres 21.5
2118 Male, age 80, both hemispheres 20.3
2302 Female, age 91, both hemispheres 18.1
2180 Male, age 61, both hemispheres 17.0
2741 Female, age 85, both hemispheres 15.9

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

11.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 11.3
FF:10038-101F2 18-64 years, mixed 13.3
FF:10174-103C3 60 years, female 12.2
FF:10155-103A2 76 years, female 8.5

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.8
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 13.8
Samples: 4

Max nTPM: 16.1
Min nTPM: 9.9
Sample A Female 13.8
Sample B Female 9.9
Sample C Male 15.4
Sample D Male 16.1

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