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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:66.2 nTPM
HPA Brain:121.4 nTPM
GTEx:66.2 nTPM
FANTOM5:168.7 Scaled Tags Per Million
Pig:293.4 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

121.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 90.0
2194 Female, age 79, both hemispheres 104.4
2565 Male, age 75, midline 97.5
1981 Female, age 72, midline 86.7
2048 Male, age 55, midline 82.6
2816 Male, age 47, midline 78.9
Cervical spinal cord, dorsal horn
nTPM: 82.2
2173 Female, age 72, unknown 102.8
1877 Male, age 55, unknown 82.6
2069 Male, age 47, both hemispheres 81.8
2296 Male, age 66, both hemispheres 80.7
2297 Male, age 75, both hemispheres 78.6
2721 Male, age 90, both hemispheres 66.7
Cervical spinal cord, ventral horn
nTPM: 121.4
2480 Male, age 75, both hemispheres 165.6
2809 Male, age 90, both hemispheres 146.7
2820 Female, age 79, both hemispheres 121.9
2068 Male, age 55, unknown 110.4
2295 Male, age 66, both hemispheres 109.2
2098 Female, age 72, unknown 74.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 66.2
Samples: 159

Max nTPM: 144.4
Min nTPM: 31.9
Std nTPM: 16.3
Median nTPM: 64.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 144.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 113.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 112.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 109.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 106.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 105.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 104.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 103.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 102.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 97.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 87.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 86.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 84.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 83.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 81.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 81.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 81.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 80.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 80.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 79.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 79.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 78.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 78.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 77.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 77.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 77.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 77.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 77.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 76.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 76.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 76.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 76.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 76.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 75.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 75.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 75.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 75.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 75.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 74.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 74.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 74.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 74.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 73.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 73.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 73.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 73.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 73.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 73.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 72.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 72.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 72.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 72.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 72.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 71.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 71.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 71.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 70.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 70.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 70.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 69.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 69.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 69.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 69.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 68.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 68.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 67.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 67.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 67.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 66.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 66.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 66.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 66.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 66.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 65.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 65.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 65.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 65.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 65.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 65.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 64.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 64.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 64.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 64.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 63.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 63.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 63.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 63.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 63.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 63.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 62.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 62.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 62.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 62.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 62.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 61.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 61.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 61.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 61.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 61.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 61.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 60.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 60.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 60.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 59.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 59.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 59.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 59.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 59.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 59.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 57.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 57.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 57.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 57.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 56.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 56.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 55.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 54.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 54.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 54.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 54.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 54.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 54.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 54.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 54.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 54.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 53.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 53.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 53.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 53.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 52.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 52.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 52.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 52.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 51.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 51.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 50.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 50.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 49.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 49.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 49.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 49.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 49.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 47.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 47.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 46.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 46.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 46.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 45.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 45.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 44.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 43.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 42.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 42.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 41.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 41.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 39.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 39.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 35.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 31.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

168.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 168.7
FF:10181-103D1 60 years, female 203.2
FF:10159-103A6 76 years, female 134.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

293.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 230.3
Samples: 4

Max nTPM: 274.7
Min nTPM: 175.0
Sample A Female 274.7
Sample B Female 197.4
Sample C Male 175.0
Sample D Male 274.1
Ventral spinal cord
nTPM: 293.4
Samples: 4

Max nTPM: 329.5
Min nTPM: 277.8
Sample A Female 329.5
Sample B Female 287.6
Sample C Male 277.8
Sample D Male 278.5

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