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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
525.9
nTPM
GTEx:
525.9
nTPM
FANTOM5:
563.5
Scaled Tags Per Million
Pig:
736.6
nTPM
Mouse:
2414.2
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA041301
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Low
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA044239
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
525.9
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 525.9
Samples: 105
Max nTPM: 1460.8
Min nTPM: 76.6
Std nTPM: 300.4
Median nTPM:
218_1
71 years, female
1460.8
352_1
62 years, male
1334.3
350_1
84 years, female
1305.4
353_1
82 years, female
1269.1
319_1
81 years, male
1228.4
322_1
76 years, male
1170.3
321_1
62 years, female
1059.1
172_1
72 years, female
1057.1
386_1
76 years, male
1042.9
356_1
87 years, female
987.7
293_1
68 years, female
977.8
163_1
78 years, male
930.2
320_1
89 years, female
898.6
354_1
81 years, female
846.7
355_1
70 years, female
834.4
6_1
73 years, female
822.1
237_1
82 years, male
818.9
335_1
73 years, female
790.8
251_1
78 years, male
779.6
286_1
68 years, female
779.1
318_1
68 years, male
767.8
447_1
81 years, male
745.1
243_1
75 years, male
740.5
376_1
75 years, female
739.4
377_1
82 years, female
727.4
292_1
71 years, male
717.4
348_1
84 years, male
708.3
177_1
74 years, male
705.0
405_1
91 years, male
703.3
349_1
83 years, male
695.5
316_1
62 years, male
671.5
425_1
59 years, female
639.7
351_1
91 years, male
630.6
406_1
79 years, male
619.9
311_1
78 years, male
598.0
480_1
63 years, male
582.6
503_1
68 years, male
558.4
229_1
69 years, female
550.1
389_1
86 years, female
540.6
526_1
61 years, male
527.1
384_1
83 years, male
521.3
189_1
76 years, male
514.8
291_1
76 years, male
507.5
375_1
74 years, female
500.6
396_1
62 years, male
493.0
35_1
74 years, female
473.9
246_1
77 years, male
470.3
518_1
75 years, female
465.5
153_1
70 years, female
460.6
404_1
82 years, female
460.0
347_1
72 years, male
457.2
506_1
65 years, male
453.1
517_1
88 years, male
450.2
173_1
67 years, male
449.5
99_1
64 years, male
447.6
317_1
60 years, male
438.5
324_1
76 years, male
429.7
379_1
60 years, male
425.3
394_1
75 years, female
425.0
264_1
73 years, female
423.4
9_1
66 years, female
412.9
468_1
89 years, male
412.1
145_1
84 years, male
400.7
217_1
76 years, male
393.6
2_1
77 years, female
392.8
266_1
85 years, male
390.7
115_1
83 years, male
389.9
495_1
57 years, female
374.2
4_1
88 years, female
373.3
126_1
63 years, male
370.5
265_1
87 years, male
362.5
254_1
77 years, female
344.3
307_1
66 years, female
341.5
117_1
61 years, male
335.4
499_1
55 years, female
331.2
18_1
88 years, male
325.8
295_1
61 years, female
321.1
17_1
71 years, male
315.3
315_1
62 years, female
312.3
139_1
64 years, female
307.1
452_1
88 years, female
303.7
43_1
64 years, female
297.8
81_1
67 years, male
294.5
137_1
83 years, male
292.9
313_1
79 years, female
277.7
120_1
70 years, female
265.1
415_1
77 years, female
242.9
466_1
57 years, female
239.7
142_1
61 years, female
229.5
109_1
81 years, female
228.0
162_1
79 years, female
223.9
32_1
67 years, male
219.7
288_1
66 years, female
210.6
41_1
94 years, female
209.4
119_1
70 years, female
195.7
42_1
85 years, male
185.4
308_1
70 years, female
177.9
149_1
88 years, male
171.3
89_1
63 years, male
168.6
414_1
84 years, female
166.4
490_1
67 years, female
143.9
314_1
67 years, male
141.2
501_1
88 years, male
116.2
491_1
89 years, female
109.1
413_1
59 years, female
76.6
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
