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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1152.1 nTPM
HPA Brain:286.6 nTPM
GTEx:1152.1 nTPM
FANTOM5:27.3 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

286.6
Sample id Sample description nTPM
Amygdala
nTPM: 286.6
2695 Female, age 67, right hemisphere 348.3
2514 Male, age 75, right hemisphere 316.0
1987 Female, age 91, left hemisphere 262.4
2517 Female, age 94, left hemisphere 261.0
2814 Male, age 76, right hemisphere 245.4
Basal amygdala
nTPM: 234.4
2827 Female, age 67, right hemisphere 296.2
2609 Male, age 75, right hemisphere 270.0
2110 Male, age 80, left hemisphere 233.8
2685 Female, age 94, left hemisphere 223.7
2243 Female, age 91, right hemisphere 201.5
1955 Male, age 76, both hemispheres 181.1
Central amygdala
nTPM: 261.9
2826 Female, age 94, left hemisphere 385.2
2515 Male, age 75, right hemisphere 312.1
1905 Male, age 76, both hemispheres 207.7
2239 Male, age 80, left hemisphere 206.7
2701 Female, age 91, right hemisphere 197.8
Corticomedial amygdala
nTPM: 231.2
2428 Male, age 75, right hemisphere 306.6
2535 Female, age 67, right hemisphere 227.2
2829 Male, age 80, left hemisphere 225.6
2242 Female, age 91, right hemisphere 212.4
2240 Male, age 76, both hemispheres 211.6
2429 Female, age 94, left hemisphere 204.1
Lateral amygdala
nTPM: 267.2
2830 Female, age 67, right hemisphere 386.2
2516 Male, age 75, right hemisphere 314.9
2534 Female, age 94, left hemisphere 302.6
2256 Male, age 80, left hemisphere 235.4
2255 Female, age 91, right hemisphere 187.4
1883 Male, age 76, both hemispheres 176.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1152.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1152.1
Samples: 152

Max nTPM: 4007.5
Min nTPM: 625.7
Std nTPM: 473.4
Median nTPM: 1058.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4007.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3244.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2847.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2692.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2575.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2410.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2283.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1971.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1956.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1877.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1866.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1752.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1698.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1697.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1616.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1612.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1593.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1541.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1504.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1500.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1466.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1426.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1376.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1355.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1355.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1348.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1344.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1330.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1308.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1276.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1263.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1262.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1254.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1235.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1230.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1227.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1202.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1197.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1189.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1184.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1180.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1179.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1177.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1177.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1165.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1162.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1160.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1153.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1140.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1134.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1133.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1132.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1131.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1129.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1129.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1127.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1127.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1119.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1116.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1113.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1113.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1107.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1105.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1103.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1094.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1093.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1087.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1084.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1082.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1081.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1081.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1071.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1068.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1065.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1059.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1058.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1058.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1034.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1026.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1020.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1015.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1008.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1007.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1007.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 997.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 995.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 992.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 988.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 986.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 981.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 970.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 967.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 964.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 960.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 959.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 955.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 950.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 950.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 949.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 946.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 941.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 938.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 934.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 933.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 929.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 924.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 915.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 912.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 911.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 910.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 908.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 905.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 900.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 891.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 889.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 886.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 882.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 878.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 874.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 874.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 872.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 858.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 853.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 849.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 847.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 844.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 841.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 839.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 837.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 831.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 830.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 830.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 817.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 806.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 805.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 801.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 792.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 789.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 779.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 774.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 770.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 765.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 736.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 732.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 731.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 713.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 701.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 685.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 666.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 662.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 650.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 625.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

27.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 27.3
FF:10151-102I7 76 years, female 27.3

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