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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:136.4 nTPM
HPA Brain:203.4 nTPM
GTEx:136.4 nTPM
FANTOM5:437.0 Scaled Tags Per Million
Pig:195.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 203.4
2048 Male, age 55, midline 250.8
1981 Female, age 72, midline 233.7
2565 Male, age 75, midline 184.7
2816 Male, age 47, midline 178.0
2194 Female, age 79, both hemispheres 169.6
Cervical spinal cord, dorsal horn
nTPM: 192.4
2069 Male, age 47, both hemispheres 273.6
2296 Male, age 66, both hemispheres 245.8
2173 Female, age 72, unknown 239.3
1877 Male, age 55, unknown 167.6
2721 Male, age 90, both hemispheres 156.3
2297 Male, age 75, both hemispheres 71.4
Cervical spinal cord, ventral horn
nTPM: 191.9
2098 Female, age 72, unknown 377.6
2809 Male, age 90, both hemispheres 198.8
2068 Male, age 55, unknown 168.1
2295 Male, age 66, both hemispheres 167.3
2480 Male, age 75, both hemispheres 123.8
2820 Female, age 79, both hemispheres 115.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 136.4
Samples: 159

Max nTPM: 437.4
Min nTPM: 41.6
Std nTPM: 63.2
Median nTPM: 118.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 437.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 303.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 294.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 289.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 277.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 275.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 268.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 263.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 260.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 258.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 254.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 254.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 247.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 241.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 240.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 232.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 232.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 221.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 221.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 209.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 208.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 204.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 203.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 202.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 194.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 191.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 191.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 188.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 187.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 183.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 181.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 181.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 179.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 178.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 175.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 174.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 173.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 171.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 170.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 166.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 165.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 164.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 164.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 159.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 159.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 157.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 156.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 154.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 153.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 151.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 150.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 149.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 147.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 146.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 145.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 144.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 143.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 143.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 140.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 139.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 137.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 137.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 135.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 133.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 133.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 130.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 130.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 130.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 127.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 127.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 127.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 126.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 125.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 124.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 124.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 124.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 124.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 123.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 121.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 118.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 118.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 117.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 116.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 115.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 115.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 113.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 113.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 113.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 113.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 113.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 112.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 111.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 111.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 110.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 110.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 108.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 108.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 107.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 106.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 106.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 105.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 105.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 105.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 104.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 104.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 104.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 103.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 103.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 103.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 102.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 102.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 100.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 99.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 99.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 99.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 98.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 98.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 98.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 97.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 95.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 94.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 94.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 92.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 92.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 91.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 88.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 87.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 86.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 85.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 85.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 83.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 79.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 78.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 77.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 77.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 75.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 75.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 74.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 73.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 73.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 72.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 72.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 71.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 70.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 69.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 68.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 68.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 68.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 66.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 65.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 59.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 59.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 54.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 49.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 48.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 48.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 47.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 41.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 41.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

437.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 437.0
FF:10181-103D1 60 years, female 472.8
FF:10159-103A6 76 years, female 401.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

195.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 195.2
Samples: 4

Max nTPM: 366.6
Min nTPM: 73.0
Sample A Female 73.0
Sample B Female 220.2
Sample C Male 366.6
Sample D Male 121.0
Ventral spinal cord
nTPM: 109.3
Samples: 4

Max nTPM: 169.3
Min nTPM: 52.0
Sample A Female 52.0
Sample B Female 114.5
Sample C Male 169.3
Sample D Male 101.2

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