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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:322.0 nTPM
HPA Brain:245.9 nTPM
GTEx:322.0 nTPM
FANTOM5:192.4 Scaled Tags Per Million
Mouse:130.1 nTPM
Allen mouse:2.4 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

245.9
Sample id Sample description nTPM
Amygdala
nTPM: 245.9
2695 Female, age 67, right hemisphere 312.1
1987 Female, age 91, left hemisphere 250.3
2814 Male, age 76, right hemisphere 226.4
2514 Male, age 75, right hemisphere 224.8
2517 Female, age 94, left hemisphere 215.8
Basal amygdala
nTPM: 208.9
2609 Male, age 75, right hemisphere 339.5
2243 Female, age 91, right hemisphere 241.0
2110 Male, age 80, left hemisphere 205.2
1955 Male, age 76, both hemispheres 176.7
2685 Female, age 94, left hemisphere 174.9
2827 Female, age 67, right hemisphere 116.2
Central amygdala
nTPM: 239.0
2515 Male, age 75, right hemisphere 260.0
2826 Female, age 94, left hemisphere 258.2
2701 Female, age 91, right hemisphere 248.3
1905 Male, age 76, both hemispheres 214.4
2239 Male, age 80, left hemisphere 214.0
Corticomedial amygdala
nTPM: 196.4
2829 Male, age 80, left hemisphere 274.1
2428 Male, age 75, right hemisphere 245.4
2242 Female, age 91, right hemisphere 228.2
2429 Female, age 94, left hemisphere 165.3
2240 Male, age 76, both hemispheres 137.6
2535 Female, age 67, right hemisphere 127.5
Lateral amygdala
nTPM: 214.6
2256 Male, age 80, left hemisphere 289.7
2516 Male, age 75, right hemisphere 274.3
2255 Female, age 91, right hemisphere 261.0
2534 Female, age 94, left hemisphere 185.1
1883 Male, age 76, both hemispheres 170.7
2830 Female, age 67, right hemisphere 106.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

322.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 322.0
Samples: 152

Max nTPM: 773.3
Min nTPM: 11.2
Std nTPM: 148.3
Median nTPM: 294.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 773.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 772.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 743.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 741.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 740.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 684.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 599.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 597.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 581.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 579.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 577.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 568.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 541.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 534.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 527.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 523.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 513.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 506.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 501.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 500.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 499.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 499.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 485.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 480.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 466.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 459.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 454.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 443.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 441.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 438.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 432.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 417.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 416.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 415.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 414.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 400.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 396.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 394.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 394.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 393.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 392.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 387.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 376.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 367.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 367.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 361.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 361.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 355.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 354.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 352.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 346.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 344.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 341.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 339.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 337.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 327.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 326.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 322.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 321.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 321.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 320.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 320.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 320.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 317.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 313.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 310.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 309.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 309.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 309.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 302.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 302.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 301.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 300.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 299.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 296.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 294.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 294.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 293.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 292.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 292.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 289.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 287.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 287.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 286.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 286.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 286.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 284.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 281.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 281.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 280.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 277.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 274.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 273.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 272.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 271.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 264.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 262.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 257.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 257.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 256.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 255.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 252.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 251.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 251.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 248.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 248.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 247.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 245.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 243.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 241.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 238.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 237.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 236.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 234.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 228.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 225.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 223.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 220.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 216.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 216.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 211.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 209.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 208.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 204.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 194.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 194.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 188.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 183.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 170.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 170.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 168.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 166.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 166.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 161.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 157.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 152.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 151.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 147.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 145.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 145.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 136.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 135.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 135.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 128.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 127.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 114.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 102.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 87.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 80.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 79.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 67.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 11.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

192.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 192.4
FF:10151-102I7 76 years, female 192.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 130.1
Samples: 4

Max nTPM: 149.1
Min nTPM: 110.1
Sample A Male 110.1
Sample B Male 121.5
Sample C Female 149.1
Sample D Female 139.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.4
68632918 Antisense, RP_050125_02_B01, Mouse strain C57BL/6J (56 days, male) 2.4

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