MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.1 nTPM
HPA Brain:30.0 nTPM
GTEx:36.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.0
1830 Male, age 51, unknown 32.1
2219 Male, age 76, both hemispheres 30.3
2586 Male, age 75, left hemisphere 26.2
1833 Male, age 53, unknown 24.7
2666 Male, age 74, left hemisphere 22.7
2019 Male, age 18, unknown 22.1
2828 Female, age 72, unknown 21.8
2411 Female, age 72, unknown 21.5
1827 Male, age 72, unknown 20.0
1870 Female, age 42, unknown 18.4
Dorsal raphe nucleus
nTPM: 23.1
2750 Male, age 76, both hemispheres 28.0
2047 Male, age 72, unknown 27.2
2016 Female, age 72, unknown 21.4
2298 Female, age 72, unknown 19.8
1828 Male, age 53, unknown 18.8
Inferior colliculus
nTPM: 19.4
2849 Male, age 72, unknown 21.8
1848 Female, age 42, unknown 19.3
2097 Female, age 72, unknown 19.0
1890 Male, age 53, unknown 17.5
Median raphe nucleus
nTPM: 25.4
2220 Male, age 76, midline 25.4
Periaquaductal grey, anterior
nTPM: 30.0
2502 Female, age 75, unknown 39.2
1795 Male, age 51, unknown 28.8
1947 Male, age 18, unknown 22.1
Periaquaductal grey, dorsal
nTPM: 20.0
2464 Female, age 72, unknown 26.0
2850 Male, age 76, both hemispheres 18.6
1840 Male, age 53, unknown 17.9
1831 Male, age 72, unknown 17.3
Periaquaductal grey, lateral
nTPM: 23.9
2140 Male, age 76, both hemispheres 27.2
2053 Male, age 18, unknown 22.5
2272 Male, age 74, both hemispheres 22.1
Pretectal area
nTPM: 21.8
2316 Male, age 76, right hemisphere 29.7
2407 Male, age 75, both hemispheres 25.8
2667 Female, age 75, unknown 24.3
2825 Male, age 18, unknown 24.0
2007 Male, age 72, unknown 23.2
2224 Female, age 72, unknown 19.8
2273 Male, age 74, both hemispheres 19.6
1817 Female, age 42, unknown 19.2
1944 Female, age 72, unknown 19.0
1816 Male, age 51, unknown 17.7
1815 Male, age 53, unknown 17.6
Red nucleus
nTPM: 24.2
2769 Male, age 72, unknown 32.9
1865 Male, age 51, unknown 29.8
2588 Male, age 74, left hemisphere 27.2
2823 Male, age 76, right hemisphere 27.1
2584 Male, age 75, left hemisphere 26.5
2227 Male, age 72, unknown 25.9
1954 Female, age 42, unknown 22.5
1904 Male, age 53, unknown 22.0
2785 Male, age 18, unknown 21.9
2503 Female, age 72, unknown 19.7
1821 Female, age 72, unknown 18.3
2725 Female, age 75, unknown 17.1
Substantia nigra
nTPM: 18.9
2590 Female, age 75, unknown 24.1
2699 Male, age 18, unknown 23.9
2583 Male, age 75, right hemisphere 22.5
2665 Male, age 74, both hemispheres 21.0
1941 Male, age 53, unknown 19.0
2409 Female, age 72, unknown 18.1
1851 Male, age 51, unknown 17.2
1889 Female, age 72, unknown 17.1
1916 Female, age 42, unknown 17.1
2241 Male, age 72, unknown 8.7
Superior colliculus
nTPM: 22.2
1995 Male, age 72, unknown 27.6
2261 Male, age 18, unknown 24.7
2664 Male, age 75, both hemispheres 24.6
2087 Female, age 72, unknown 24.4
1913 Female, age 42, unknown 23.5
2587 Male, age 74, left hemisphere 22.9
1796 Male, age 53, unknown 21.3
1839 Male, age 51, unknown 19.2
1895 Male, age 76, right hemisphere 18.9
2668 Female, age 75, unknown 15.2
Ventral tegmental area
nTPM: 26.6
2021 Male, age 53, unknown 46.3
2223 Female, age 72, unknown 28.3
1942 Male, age 51, unknown 22.5
2218 Male, age 76, both hemispheres 21.7
2410 Female, age 72, unknown 21.5
1915 Female, age 42, unknown 19.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 36.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.1
Samples: 139

Max nTPM: 134.2
Min nTPM: 5.9
Std nTPM: 19.9
Median nTPM: 31.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 134.2
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 108.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 101.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 87.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 77.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 73.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 73.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 72.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 68.8
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 67.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 65.1
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