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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:61.1 nTPM
HPA Brain:43.3 nTPM
GTEx:61.1 nTPM
FANTOM5:36.0 Scaled Tags Per Million
Pig:24.1 nTPM
Mouse:58.9 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

43.3
Sample id Sample description nTPM
Amygdala
nTPM: 33.5
2814 Male, age 76, right hemisphere 38.6
2517 Female, age 94, left hemisphere 35.1
1987 Female, age 91, left hemisphere 34.4
2695 Female, age 67, right hemisphere 33.6
2514 Male, age 75, right hemisphere 25.9
Basal amygdala
nTPM: 38.7
2685 Female, age 94, left hemisphere 43.7
1955 Male, age 76, both hemispheres 41.0
2243 Female, age 91, right hemisphere 40.9
2609 Male, age 75, right hemisphere 36.2
2827 Female, age 67, right hemisphere 35.9
2110 Male, age 80, left hemisphere 34.7
Central amygdala
nTPM: 39.8
2826 Female, age 94, left hemisphere 49.6
1905 Male, age 76, both hemispheres 41.3
2701 Female, age 91, right hemisphere 37.1
2239 Male, age 80, left hemisphere 36.2
2515 Male, age 75, right hemisphere 34.7
Corticomedial amygdala
nTPM: 43.3
2429 Female, age 94, left hemisphere 63.2
2428 Male, age 75, right hemisphere 52.3
2829 Male, age 80, left hemisphere 41.4
2242 Female, age 91, right hemisphere 37.7
2535 Female, age 67, right hemisphere 37.2
2240 Male, age 76, both hemispheres 27.9
Lateral amygdala
nTPM: 36.1
2534 Female, age 94, left hemisphere 45.1
1883 Male, age 76, both hemispheres 44.3
2255 Female, age 91, right hemisphere 35.7
2256 Male, age 80, left hemisphere 33.2
2516 Male, age 75, right hemisphere 32.6
2830 Female, age 67, right hemisphere 25.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 61.1
Samples: 152

Max nTPM: 332.7
Min nTPM: 14.0
Std nTPM: 32.7
Median nTPM: 55.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 332.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 209.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 138.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 122.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 121.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 109.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 108.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 102.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 99.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 95.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 94.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 92.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 89.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 87.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 86.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 86.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 84.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 82.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 82.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 82.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 81.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 80.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 79.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 78.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 78.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 77.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 77.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 77.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 76.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 76.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 75.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 75.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 75.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 74.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 74.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 74.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 73.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 72.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 71.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 71.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 70.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 68.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 67.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 67.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 66.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 65.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 65.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 65.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 65.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 64.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 64.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 64.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 64.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 63.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 63.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 63.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 62.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 62.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 62.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 62.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 62.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 62.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 61.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 61.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 60.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 60.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 60.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 60.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 59.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 59.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 57.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 56.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 56.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 56.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 55.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 55.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 55.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 55.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 54.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 54.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 53.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 53.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 52.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 52.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 52.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 52.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 51.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 51.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 51.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 50.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 50.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 49.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 49.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 49.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 49.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 49.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 49.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 49.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 48.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 48.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 48.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 47.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 47.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 47.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 46.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 46.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 46.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 46.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 45.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 45.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 44.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 44.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 43.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 43.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 43.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 43.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 43.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 43.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 42.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 41.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 41.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 41.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 40.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 40.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 39.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 39.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 39.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 39.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 38.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 38.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 37.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 37.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 36.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 36.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 35.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 35.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 35.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 34.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 34.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 33.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 32.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 30.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 30.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 30.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 29.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 29.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 28.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 27.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 24.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 24.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 23.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 14.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

36.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 36.0
FF:10151-102I7 76 years, female 36.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.1
Pig sample Sample description nTPM
Amygdala
nTPM: 24.1
Samples: 4

Max nTPM: 36.3
Min nTPM: 16.6
Sample A Female 36.3
Sample B Female 21.6
Sample C Male 21.7
Sample D Male 16.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 58.9
Samples: 4

Max nTPM: 68.0
Min nTPM: 50.3
Sample A Male 50.3
Sample B Male 62.3
Sample C Female 68.0
Sample D Female 54.9

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