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LYPD4
HPA
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  • LYPD4
PROTEIN SUMMARY GENE INFORMATION RNA DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

LYPD4
Synonyms MGC42718
Gene descriptioni

Full gene name according to HGNC.

LY6/PLAUR domain containing 4
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 19
Cytoband q13.2
Chromosome location (bp) 41837074 - 41844697
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000273111 (version 109)
Entrez gene 147719
HGNC HGNC:28659
UniProt Q6UWN0 (UniProt - Evidence at transcript level)
neXtProt NX_Q6UWN0
GeneCards LYPD4
Antibodypedia LYPD4 antibodies


PROTEIN FUNCTION
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to be located in extracellular region and plasma membrane. Predicted to be active in plasma membrane raft. Predicted to be anchored component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
LYPD4-201
ENSP00000339568
ENST00000343055
Q6UWN0
[Direct mapping] Ly6/PLAUR domain-containing protein 4
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005576 [extracellular region]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
GO:0044853 [plasma membrane raft]
Show all
211 aa
22.6 kDa
Yes 0
LYPD4-202
ENSP00000472570
ENST00000601246
Q6UWN0
[Direct mapping] Ly6/PLAUR domain-containing protein 4
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005576 [extracellular region]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
GO:0044853 [plasma membrane raft]
Show all
211 aa
22.6 kDa
Yes 0
LYPD4-203
ENSP00000476510
ENST00000609812
Q6UWN0
[Direct mapping] Ly6/PLAUR domain-containing protein 4
Show all
A8K8E0
[Target identity:100%; Query identity:100%] LY6/PLAUR domain containing 4, isoform CRA_b; Sperm membrane receptor; Testicular tissue protein Li 159; cDNA FLJ77180, highly similar to Homo sapiens LY6/PLAUR domain containing 4 (LYPD4), mRNA
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0005576 [extracellular region]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
GO:0044853 [plasma membrane raft]
Show all
246 aa
26.8 kDa
Yes 0

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